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Cluster: HRGMv2_3999_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3999_27 HRGMv2_3999_27_7 6741 7709 - GH130_2
pfam HRGMv2_3999_27 HRGMv2_3999_27_8 7735 9075 - MFS_1
pfam HRGMv2_3999_27 HRGMv2_3999_27_9 9616 10692 - HGSNAT_cat
TC HRGMv2_3999_27 HRGMv2_3999_27_10 10857 12257 - 2.A.1.1.55
pfam HRGMv2_3999_27 HRGMv2_3999_27_11 12273 13703 - MetallophosC | MetallophosN
STP HRGMv2_3999_27 HRGMv2_3999_27_12 13707 15608 - Pyr_redox_2
TC HRGMv2_3999_27 HRGMv2_3999_27_13 15757 17382 - 8.A.46.2.1
TC HRGMv2_3999_27 HRGMv2_3999_27_14 17394 20537 - 1.B.14.6.13
Gene ID: HRGMv2_3999_27_7
Type: CAZyme
Location: 6741 - 7709 (-)
Gene ID: HRGMv2_3999_27_8
Type: pfam
Location: 7735 - 9075 (-)
Gene ID: HRGMv2_3999_27_9
Type: pfam
Location: 9616 - 10692 (-)
Gene ID: HRGMv2_3999_27_10
Type: TC
Location: 10857 - 12257 (-)
Gene ID: HRGMv2_3999_27_11
Type: pfam
Location: 12273 - 13703 (-)
Gene ID: HRGMv2_3999_27_12
Type: STP
Location: 13707 - 15608 (-)
Gene ID: HRGMv2_3999_27_13
Type: TC
Location: 15757 - 17382 (-)
Gene ID: HRGMv2_3999_27_14
Type: TC
Location: 17394 - 20537 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3999_27_7 vegan > omnivore 1.26822 0.03783

🧭 Explore Read Mapping of CGC

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