Cluster: HRGMv2_3996_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3996
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3996_120 | HRGMv2_3996_120_39 | 44628 | 45731 | - | 3.A.1.132.3 |
| CAZyme | HRGMv2_3996_120 | HRGMv2_3996_120_40 | 46299 | 48776 | + | GH115 |
| peptidase | HRGMv2_3996_120 | HRGMv2_3996_120_41 | 48786 | 49673 | + | S33.021 |
| CAZyme | HRGMv2_3996_120 | HRGMv2_3996_120_42 | 49848 | 51035 | + | GH33 |
| NULL(UNKNOWN) | HRGMv2_3996_120 | HRGMv2_3996_120_43 | 51174 | 51383 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3996_120 | HRGMv2_3996_120_44 | 51712 | 53253 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3996_120 | HRGMv2_3996_120_45 | 53250 | 54068 | + | GT2 |
| pfam | HRGMv2_3996_120 | HRGMv2_3996_120_46 | 54089 | 54400 | + | Glycos_transf_2 |
| NULL(UNKNOWN) | HRGMv2_3996_120 | HRGMv2_3996_120_47 | 54502 | 55056 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3996_120 | HRGMv2_3996_120_48 | 55053 | 56150 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3996_120 | HRGMv2_3996_120_49 | 56160 | 56819 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3996_120 | HRGMv2_3996_120_50 | 56847 | 57830 | + | GT2 |
Gene ID: HRGMv2_3996_120_39
Type: TC
Location: 44628 - 45731 (-)
Type: TC
Location: 44628 - 45731 (-)
Gene ID: HRGMv2_3996_120_40
Type: CAZyme
Location: 46299 - 48776 (+)
Type: CAZyme
Location: 46299 - 48776 (+)
Gene ID: HRGMv2_3996_120_41
Type: peptidase
Location: 48786 - 49673 (+)
Type: peptidase
Location: 48786 - 49673 (+)
Gene ID: HRGMv2_3996_120_42
Type: CAZyme
Location: 49848 - 51035 (+)
Type: CAZyme
Location: 49848 - 51035 (+)
Gene ID: HRGMv2_3996_120_43
Type:
Location: 51174 - 51383 (-)
Type:
Location: 51174 - 51383 (-)
Gene ID: HRGMv2_3996_120_44
Type:
Location: 51712 - 53253 (+)
Type:
Location: 51712 - 53253 (+)
Gene ID: HRGMv2_3996_120_45
Type: CAZyme
Location: 53250 - 54068 (+)
Type: CAZyme
Location: 53250 - 54068 (+)
Gene ID: HRGMv2_3996_120_46
Type: pfam
Location: 54089 - 54400 (+)
Type: pfam
Location: 54089 - 54400 (+)
Gene ID: HRGMv2_3996_120_47
Type:
Location: 54502 - 55056 (+)
Type:
Location: 54502 - 55056 (+)
Gene ID: HRGMv2_3996_120_48
Type: CAZyme
Location: 55053 - 56150 (+)
Type: CAZyme
Location: 55053 - 56150 (+)
Gene ID: HRGMv2_3996_120_49
Type:
Location: 56160 - 56819 (+)
Type:
Location: 56160 - 56819 (+)
Gene ID: HRGMv2_3996_120_50
Type: CAZyme
Location: 56847 - 57830 (+)
Type: CAZyme
Location: 56847 - 57830 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900322035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.