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Cluster: HRGMv2_3994_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3994_143 HRGMv2_3994_143_13 10414 11496 + 2.A.6.2.28
TC HRGMv2_3994_143 HRGMv2_3994_143_14 11518 14556 + 2.A.6.2.33
pfam HRGMv2_3994_143 HRGMv2_3994_143_15 14546 15919 + OEP | OEP
pfam HRGMv2_3994_143 HRGMv2_3994_143_16 15938 16621 + Lipase_GDSL_lke
CAZyme HRGMv2_3994_143 HRGMv2_3994_143_17 16743 18680 - GH97
CAZyme HRGMv2_3994_143 HRGMv2_3994_143_18 18814 21117 - GH92
NULL(UNKNOWN) HRGMv2_3994_143 HRGMv2_3994_143_19 21714 21815 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3994_143 HRGMv2_3994_143_20 21858 24437 - GH78
Gene ID: HRGMv2_3994_143_13
Type: TC
Location: 10414 - 11496 (+)
Gene ID: HRGMv2_3994_143_14
Type: TC
Location: 11518 - 14556 (+)
Gene ID: HRGMv2_3994_143_15
Type: pfam
Location: 14546 - 15919 (+)
Gene ID: HRGMv2_3994_143_16
Type: pfam
Location: 15938 - 16621 (+)
Gene ID: HRGMv2_3994_143_17
Type: CAZyme
Location: 16743 - 18680 (-)
Gene ID: HRGMv2_3994_143_18
Type: CAZyme
Location: 18814 - 21117 (-)
Gene ID: HRGMv2_3994_143_19
Type:
Location: 21714 - 21815 (-)
Gene ID: HRGMv2_3994_143_20
Type: CAZyme
Location: 21858 - 24437 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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