Cluster: HRGMv2_3994_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3994
- CGC Family ID: CGCFAM_00013
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3994_48 | HRGMv2_3994_48_11 | 10684 | 11385 | + | 9.B.146.1.6 |
| TC | HRGMv2_3994_48 | HRGMv2_3994_48_12 | 11339 | 11953 | + | 9.B.146.1.3 |
| pfam | HRGMv2_3994_48 | HRGMv2_3994_48_13 | 11984 | 13315 | + | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| NULL(UNKNOWN) | HRGMv2_3994_48 | HRGMv2_3994_48_14 | 13356 | 13559 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3994_48 | HRGMv2_3994_48_15 | 13592 | 14659 | + | 2.A.103.1.2 |
| CAZyme | HRGMv2_3994_48 | HRGMv2_3994_48_16 | 14827 | 15837 | + | GT28 |
Gene ID: HRGMv2_3994_48_11
Type: TC
Location: 10684 - 11385 (+)
Type: TC
Location: 10684 - 11385 (+)
Gene ID: HRGMv2_3994_48_12
Type: TC
Location: 11339 - 11953 (+)
Type: TC
Location: 11339 - 11953 (+)
Gene ID: HRGMv2_3994_48_13
Type: pfam
Location: 11984 - 13315 (+)
Type: pfam
Location: 11984 - 13315 (+)
Gene ID: HRGMv2_3994_48_14
Type:
Location: 13356 - 13559 (+)
Type:
Location: 13356 - 13559 (+)
Gene ID: HRGMv2_3994_48_15
Type: TC
Location: 13592 - 14659 (+)
Type: TC
Location: 13592 - 14659 (+)
Gene ID: HRGMv2_3994_48_16
Type: CAZyme
Location: 14827 - 15837 (+)
Type: CAZyme
Location: 14827 - 15837 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900553465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.