Cluster: HRGMv2_3993_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3993
- CGC Family ID: CGCFAM_05806
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3993_60 | HRGMv2_3993_60_18 | 16833 | 18686 | - | GH20 |
| pfam | HRGMv2_3993_60 | HRGMv2_3993_60_19 | 18775 | 19968 | - | Thump_like | PG_1098_Fer |
| peptidase | HRGMv2_3993_60 | HRGMv2_3993_60_20 | 20191 | 20832 | - | M15.UPD |
| TC | HRGMv2_3993_60 | HRGMv2_3993_60_21 | 21454 | 23043 | + | 3.D.10.1.4 |
Gene ID: HRGMv2_3993_60_18
Type: CAZyme
Location: 16833 - 18686 (-)
Type: CAZyme
Location: 16833 - 18686 (-)
Gene ID: HRGMv2_3993_60_19
Type: pfam
Location: 18775 - 19968 (-)
Type: pfam
Location: 18775 - 19968 (-)
Gene ID: HRGMv2_3993_60_20
Type: peptidase
Location: 20191 - 20832 (-)
Type: peptidase
Location: 20191 - 20832 (-)
Gene ID: HRGMv2_3993_60_21
Type: TC
Location: 21454 - 23043 (+)
Type: TC
Location: 21454 - 23043 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp018383375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3993_60_21 | vegetarian > vegan | 1.26980 | 0.04047 |