Cluster: HRGMv2_3993_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate: pectin/alpha-glucan
- Genome ID: HRGMv2_3993
- CGC Family ID: CGCFAM_00025
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3993_103 | HRGMv2_3993_103_1 | 305 | 1726 | - | GH13_6 |
| pfam | HRGMv2_3993_103 | HRGMv2_3993_103_2 | 1835 | 3265 | - | SusF_SusE | SusF_N |
| pfam | HRGMv2_3993_103 | HRGMv2_3993_103_3 | 3379 | 4557 | - | SusE | SusF_SusE |
| TC | HRGMv2_3993_103 | HRGMv2_3993_103_4 | 4626 | 6239 | - | 8.A.46.1.1 |
| TC | HRGMv2_3993_103 | HRGMv2_3993_103_5 | 6295 | 9306 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3993_103 | HRGMv2_3993_103_6 | 9471 | 11642 | - | GH97 |
| NULL(UNKNOWN) | HRGMv2_3993_103 | HRGMv2_3993_103_7 | 11987 | 12517 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3993_103 | HRGMv2_3993_103_8 | 12519 | 14393 | - | GH13_46 |
| NULL(UNKNOWN) | HRGMv2_3993_103 | HRGMv2_3993_103_9 | 14694 | 15248 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3993_103 | HRGMv2_3993_103_10 | 15206 | 16360 | + | DUF6377 |
| CAZyme | HRGMv2_3993_103 | HRGMv2_3993_103_11 | 16459 | 17598 | - | GH53 |
| CAZyme | HRGMv2_3993_103 | HRGMv2_3993_103_12 | 17664 | 20135 | - | GH2 |
Gene ID: HRGMv2_3993_103_1
Type: CAZyme
Location: 305 - 1726 (-)
Type: CAZyme
Location: 305 - 1726 (-)
Gene ID: HRGMv2_3993_103_2
Type: pfam
Location: 1835 - 3265 (-)
Type: pfam
Location: 1835 - 3265 (-)
Gene ID: HRGMv2_3993_103_3
Type: pfam
Location: 3379 - 4557 (-)
Type: pfam
Location: 3379 - 4557 (-)
Gene ID: HRGMv2_3993_103_4
Type: TC
Location: 4626 - 6239 (-)
Type: TC
Location: 4626 - 6239 (-)
Gene ID: HRGMv2_3993_103_5
Type: TC
Location: 6295 - 9306 (-)
Type: TC
Location: 6295 - 9306 (-)
Gene ID: HRGMv2_3993_103_6
Type: CAZyme
Location: 9471 - 11642 (-)
Type: CAZyme
Location: 9471 - 11642 (-)
Gene ID: HRGMv2_3993_103_7
Type:
Location: 11987 - 12517 (+)
Type:
Location: 11987 - 12517 (+)
Gene ID: HRGMv2_3993_103_8
Type: CAZyme
Location: 12519 - 14393 (-)
Type: CAZyme
Location: 12519 - 14393 (-)
Gene ID: HRGMv2_3993_103_9
Type:
Location: 14694 - 15248 (+)
Type:
Location: 14694 - 15248 (+)
Gene ID: HRGMv2_3993_103_10
Type: pfam
Location: 15206 - 16360 (+)
Type: pfam
Location: 15206 - 16360 (+)
Gene ID: HRGMv2_3993_103_11
Type: CAZyme
Location: 16459 - 17598 (-)
Type: CAZyme
Location: 16459 - 17598 (-)
Gene ID: HRGMv2_3993_103_12
Type: CAZyme
Location: 17664 - 20135 (-)
Type: CAZyme
Location: 17664 - 20135 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp018383375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.