Cluster: HRGMv2_3993_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3993
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3993_93 | HRGMv2_3993_93_2 | 1288 | 2796 | + | GH29 |
| CAZyme | HRGMv2_3993_93 | HRGMv2_3993_93_3 | 2854 | 6222 | + | GH16_3 |
| pfam | HRGMv2_3993_93 | HRGMv2_3993_93_4 | 6219 | 6860 | + | UPF0227 |
| pfam | HRGMv2_3993_93 | HRGMv2_3993_93_5 | 7070 | 8104 | + | HlyD_3 | HlyD_D23 |
| TC | HRGMv2_3993_93 | HRGMv2_3993_93_6 | 8168 | 10840 | + | 2.A.6.2.38 |
| TC | HRGMv2_3993_93 | HRGMv2_3993_93_7 | 10831 | 11256 | + | 2.A.6.2.39 |
| TC | HRGMv2_3993_93 | HRGMv2_3993_93_8 | 11433 | 12122 | - | 3.A.25.2.1 |
Gene ID: HRGMv2_3993_93_2
Type: CAZyme
Location: 1288 - 2796 (+)
Type: CAZyme
Location: 1288 - 2796 (+)
Gene ID: HRGMv2_3993_93_3
Type: CAZyme
Location: 2854 - 6222 (+)
Type: CAZyme
Location: 2854 - 6222 (+)
Gene ID: HRGMv2_3993_93_4
Type: pfam
Location: 6219 - 6860 (+)
Type: pfam
Location: 6219 - 6860 (+)
Gene ID: HRGMv2_3993_93_5
Type: pfam
Location: 7070 - 8104 (+)
Type: pfam
Location: 7070 - 8104 (+)
Gene ID: HRGMv2_3993_93_6
Type: TC
Location: 8168 - 10840 (+)
Type: TC
Location: 8168 - 10840 (+)
Gene ID: HRGMv2_3993_93_7
Type: TC
Location: 10831 - 11256 (+)
Type: TC
Location: 10831 - 11256 (+)
Gene ID: HRGMv2_3993_93_8
Type: TC
Location: 11433 - 12122 (-)
Type: TC
Location: 11433 - 12122 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp018383375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.