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Cluster: HRGMv2_3992_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3992_161 HRGMv2_3992_161_32 39821 42913 - 2.A.6.1.5
pfam HRGMv2_3992_161 HRGMv2_3992_161_33 42971 44110 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_3992_161 HRGMv2_3992_161_34 44260 45864 - 2.A.21.3.19
STP HRGMv2_3992_161 HRGMv2_3992_161_35 46009 49038 - B12-binding | B12-binding_2
CAZyme HRGMv2_3992_161 HRGMv2_3992_161_36 49118 51361 - GH31_3
pfam HRGMv2_3992_161 HRGMv2_3992_161_37 52120 53442 + OEP | OEP
TC HRGMv2_3992_161 HRGMv2_3992_161_38 53513 54610 + 8.A.1.1.2
NULL(UNKNOWN) HRGMv2_3992_161 HRGMv2_3992_161_39 54675 56351 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3992_161 HRGMv2_3992_161_40 56409 57293 + HTH_AraC
CAZyme HRGMv2_3992_161 HRGMv2_3992_161_41 57467 59185 - GH141
TC HRGMv2_3992_161 HRGMv2_3992_161_42 59503 61440 - 3.A.18.1.1
Gene ID: HRGMv2_3992_161_32
Type: TC
Location: 39821 - 42913 (-)
Gene ID: HRGMv2_3992_161_33
Type: pfam
Location: 42971 - 44110 (-)
Gene ID: HRGMv2_3992_161_34
Type: TC
Location: 44260 - 45864 (-)
Gene ID: HRGMv2_3992_161_35
Type: STP
Location: 46009 - 49038 (-)
Gene ID: HRGMv2_3992_161_36
Type: CAZyme
Location: 49118 - 51361 (-)
Gene ID: HRGMv2_3992_161_37
Type: pfam
Location: 52120 - 53442 (+)
Gene ID: HRGMv2_3992_161_38
Type: TC
Location: 53513 - 54610 (+)
Gene ID: HRGMv2_3992_161_39
Type:
Location: 54675 - 56351 (+)
Gene ID: HRGMv2_3992_161_40
Type: TF
Location: 56409 - 57293 (+)
Gene ID: HRGMv2_3992_161_41
Type: CAZyme
Location: 57467 - 59185 (-)
Gene ID: HRGMv2_3992_161_42
Type: TC
Location: 59503 - 61440 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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