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Cluster: HRGMv2_3990_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3990_5 HRGMv2_3990_5_14 14261 15208 + GT2
NULL(UNKNOWN) HRGMv2_3990_5 HRGMv2_3990_5_15 15208 15315 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3990_5 HRGMv2_3990_5_16 15368 16489 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3990_5 HRGMv2_3990_5_17 16500 17441 - GT2
TC HRGMv2_3990_5 HRGMv2_3990_5_18 17458 18723 - 3.D.5.1.1
TC HRGMv2_3990_5 HRGMv2_3990_5_19 18748 19374 - 3.D.5.1.1
TC HRGMv2_3990_5 HRGMv2_3990_5_20 19397 20020 - 3.D.5.1.1
pfam HRGMv2_3990_5 HRGMv2_3990_5_21 20041 20766 - FMN_bind
TC HRGMv2_3990_5 HRGMv2_3990_5_22 20781 21938 - 3.D.5.1.1
Gene ID: HRGMv2_3990_5_14
Type: CAZyme
Location: 14261 - 15208 (+)
Gene ID: HRGMv2_3990_5_15
Type:
Location: 15208 - 15315 (+)
Gene ID: HRGMv2_3990_5_16
Type:
Location: 15368 - 16489 (+)
Gene ID: HRGMv2_3990_5_17
Type: CAZyme
Location: 16500 - 17441 (-)
Gene ID: HRGMv2_3990_5_18
Type: TC
Location: 17458 - 18723 (-)
Gene ID: HRGMv2_3990_5_19
Type: TC
Location: 18748 - 19374 (-)
Gene ID: HRGMv2_3990_5_20
Type: TC
Location: 19397 - 20020 (-)
Gene ID: HRGMv2_3990_5_21
Type: pfam
Location: 20041 - 20766 (-)
Gene ID: HRGMv2_3990_5_22
Type: TC
Location: 20781 - 21938 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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