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Cluster: HRGMv2_3988_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3988_71 HRGMv2_3988_71_4 2662 3237 - 3.A.1.122.2
pfam HRGMv2_3988_71 HRGMv2_3988_71_5 3234 3953 - ThiF
pfam HRGMv2_3988_71 HRGMv2_3988_71_6 4180 5241 + NTP_transferase | ManC_GMP_beta-helix
CAZyme HRGMv2_3988_71 HRGMv2_3988_71_7 5351 6871 - GH128
CAZyme HRGMv2_3988_71 HRGMv2_3988_71_8 6887 9037 - GH3
CAZyme HRGMv2_3988_71 HRGMv2_3988_71_9 9123 9983 - GH16_3
CAZyme HRGMv2_3988_71 HRGMv2_3988_71_10 10032 11204 - GH16_3
NULL(UNKNOWN) HRGMv2_3988_71 HRGMv2_3988_71_11 11471 12400 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3988_71 HRGMv2_3988_71_12 12645 14228 - 8.A.46.1.5
TC HRGMv2_3988_71 HRGMv2_3988_71_13 14268 17387 - 1.B.14.6.1
Gene ID: HRGMv2_3988_71_4
Type: TC
Location: 2662 - 3237 (-)
Gene ID: HRGMv2_3988_71_5
Type: pfam
Location: 3234 - 3953 (-)
Gene ID: HRGMv2_3988_71_6
Type: pfam
Location: 4180 - 5241 (+)
Gene ID: HRGMv2_3988_71_7
Type: CAZyme
Location: 5351 - 6871 (-)
Gene ID: HRGMv2_3988_71_8
Type: CAZyme
Location: 6887 - 9037 (-)
Gene ID: HRGMv2_3988_71_9
Type: CAZyme
Location: 9123 - 9983 (-)
Gene ID: HRGMv2_3988_71_10
Type: CAZyme
Location: 10032 - 11204 (-)
Gene ID: HRGMv2_3988_71_11
Type:
Location: 11471 - 12400 (-)
Gene ID: HRGMv2_3988_71_12
Type: TC
Location: 12645 - 14228 (-)
Gene ID: HRGMv2_3988_71_13
Type: TC
Location: 14268 - 17387 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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