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Cluster: HRGMv2_3987_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3987_42 HRGMv2_3987_42_12 15507 17105 - GH27
TC HRGMv2_3987_42 HRGMv2_3987_42_13 17237 18445 - 3.D.5.1.1
TC HRGMv2_3987_42 HRGMv2_3987_42_14 18581 19207 - 3.D.5.1.1
TC HRGMv2_3987_42 HRGMv2_3987_42_15 19293 19928 - 3.D.5.1.1
pfam HRGMv2_3987_42 HRGMv2_3987_42_16 19998 20573 - FMN_bind
NULL(UNKNOWN) HRGMv2_3987_42 HRGMv2_3987_42_17 20542 20715 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3987_42 HRGMv2_3987_42_18 20795 21988 - 3.D.5.1.1
TC HRGMv2_3987_42 HRGMv2_3987_42_19 22032 23282 - 3.D.5.1.1
Gene ID: HRGMv2_3987_42_12
Type: CAZyme
Location: 15507 - 17105 (-)
Gene ID: HRGMv2_3987_42_13
Type: TC
Location: 17237 - 18445 (-)
Gene ID: HRGMv2_3987_42_14
Type: TC
Location: 18581 - 19207 (-)
Gene ID: HRGMv2_3987_42_15
Type: TC
Location: 19293 - 19928 (-)
Gene ID: HRGMv2_3987_42_16
Type: pfam
Location: 19998 - 20573 (-)
Gene ID: HRGMv2_3987_42_17
Type:
Location: 20542 - 20715 (-)
Gene ID: HRGMv2_3987_42_18
Type: TC
Location: 20795 - 21988 (-)
Gene ID: HRGMv2_3987_42_19
Type: TC
Location: 22032 - 23282 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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