Cluster: HRGMv2_3987_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3987
- CGC Family ID: CGCFAM_00080
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3987_115 | HRGMv2_3987_115_10 | 10356 | 12683 | + | GH20 |
| CAZyme | HRGMv2_3987_115 | HRGMv2_3987_115_11 | 12812 | 13423 | - | CE4 |
| pfam | HRGMv2_3987_115 | HRGMv2_3987_115_12 | 13574 | 16879 | - | TMEM260-like |
| TC | HRGMv2_3987_115 | HRGMv2_3987_115_13 | 17200 | 18432 | - | 9.B.156.3.1 |
Gene ID: HRGMv2_3987_115_10
Type: CAZyme
Location: 10356 - 12683 (+)
Type: CAZyme
Location: 10356 - 12683 (+)
Gene ID: HRGMv2_3987_115_11
Type: CAZyme
Location: 12812 - 13423 (-)
Type: CAZyme
Location: 12812 - 13423 (-)
Gene ID: HRGMv2_3987_115_12
Type: pfam
Location: 13574 - 16879 (-)
Type: pfam
Location: 13574 - 16879 (-)
Gene ID: HRGMv2_3987_115_13
Type: TC
Location: 17200 - 18432 (-)
Type: TC
Location: 17200 - 18432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.