Cluster: HRGMv2_3984_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3984
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3984_4 | HRGMv2_3984_4_53 | 71398 | 72090 | - | 2.A.122.1.1 |
| pfam | HRGMv2_3984_4 | HRGMv2_3984_4_54 | 72103 | 72450 | - | LrgA |
| CAZyme | HRGMv2_3984_4 | HRGMv2_3984_4_55 | 72627 | 76076 | + | GH38 |
| pfam | HRGMv2_3984_4 | HRGMv2_3984_4_56 | 76194 | 77180 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_3984_4 | HRGMv2_3984_4_57 | 77199 | 78557 | - | GH177 |
Gene ID: HRGMv2_3984_4_53
Type: TC
Location: 71398 - 72090 (-)
Type: TC
Location: 71398 - 72090 (-)
Gene ID: HRGMv2_3984_4_54
Type: pfam
Location: 72103 - 72450 (-)
Type: pfam
Location: 72103 - 72450 (-)
Gene ID: HRGMv2_3984_4_55
Type: CAZyme
Location: 72627 - 76076 (+)
Type: CAZyme
Location: 72627 - 76076 (+)
Gene ID: HRGMv2_3984_4_56
Type: pfam
Location: 76194 - 77180 (-)
Type: pfam
Location: 76194 - 77180 (-)
Gene ID: HRGMv2_3984_4_57
Type: CAZyme
Location: 77199 - 78557 (-)
Type: CAZyme
Location: 77199 - 78557 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp019422485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.