Cluster: HRGMv2_3984_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3984
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3984_3 | HRGMv2_3984_3_25 | 33311 | 34558 | + | 9.B.146.1.6 |
| pfam | HRGMv2_3984_3 | HRGMv2_3984_3_26 | 34565 | 35905 | + | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | HRGMv2_3984_3 | HRGMv2_3984_3_27 | 36277 | 37566 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_3984_3 | HRGMv2_3984_3_28 | 37570 | 38700 | + | GT28 |
Gene ID: HRGMv2_3984_3_25
Type: TC
Location: 33311 - 34558 (+)
Type: TC
Location: 33311 - 34558 (+)
Gene ID: HRGMv2_3984_3_26
Type: pfam
Location: 34565 - 35905 (+)
Type: pfam
Location: 34565 - 35905 (+)
Gene ID: HRGMv2_3984_3_27
Type: TC
Location: 36277 - 37566 (+)
Type: TC
Location: 36277 - 37566 (+)
Gene ID: HRGMv2_3984_3_28
Type: CAZyme
Location: 37570 - 38700 (+)
Type: CAZyme
Location: 37570 - 38700 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp019422485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3984_3_25 | vegetarian > vegan | 1.44853 | 0.02254 |