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Cluster: HRGMv2_3984_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3984_38 HRGMv2_3984_38_1 222 1877 + GH156
CAZyme HRGMv2_3984_38 HRGMv2_3984_38_2 1947 4052 + GH141
CAZyme HRGMv2_3984_38 HRGMv2_3984_38_3 4049 6667 + GH3
pfam HRGMv2_3984_38 HRGMv2_3984_38_4 6857 8236 - OEP | OEP
pfam HRGMv2_3984_38 HRGMv2_3984_38_5 8233 9342 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_3984_38 HRGMv2_3984_38_6 9382 10623 - 3.A.1.122.2
TC HRGMv2_3984_38 HRGMv2_3984_38_7 10729 11979 - 3.A.1.122.1
TC HRGMv2_3984_38 HRGMv2_3984_38_8 11982 12683 - 3.A.1.122.2
Gene ID: HRGMv2_3984_38_1
Type: CAZyme
Location: 222 - 1877 (+)
Gene ID: HRGMv2_3984_38_2
Type: CAZyme
Location: 1947 - 4052 (+)
Gene ID: HRGMv2_3984_38_3
Type: CAZyme
Location: 4049 - 6667 (+)
Gene ID: HRGMv2_3984_38_4
Type: pfam
Location: 6857 - 8236 (-)
Gene ID: HRGMv2_3984_38_5
Type: pfam
Location: 8233 - 9342 (-)
Gene ID: HRGMv2_3984_38_6
Type: TC
Location: 9382 - 10623 (-)
Gene ID: HRGMv2_3984_38_7
Type: TC
Location: 10729 - 11979 (-)
Gene ID: HRGMv2_3984_38_8
Type: TC
Location: 11982 - 12683 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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