Cluster: HRGMv2_3984_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3984
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3984_29 | HRGMv2_3984_29_9 | 9307 | 11217 | + | PL35 |
| pfam | HRGMv2_3984_29 | HRGMv2_3984_29_10 | 11293 | 12801 | - | Fer2 | RACo_C_ter | Raco_middle |
| CAZyme | HRGMv2_3984_29 | HRGMv2_3984_29_11 | 12987 | 16085 | + | GH106 |
| NULL(UNKNOWN) | HRGMv2_3984_29 | HRGMv2_3984_29_12 | 16155 | 17255 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3984_29 | HRGMv2_3984_29_13 | 17258 | 17962 | + | YgjP-like |
| TC | HRGMv2_3984_29 | HRGMv2_3984_29_14 | 18046 | 19455 | - | 2.A.1.1.3 |
Gene ID: HRGMv2_3984_29_9
Type: CAZyme
Location: 9307 - 11217 (+)
Type: CAZyme
Location: 9307 - 11217 (+)
Gene ID: HRGMv2_3984_29_10
Type: pfam
Location: 11293 - 12801 (-)
Type: pfam
Location: 11293 - 12801 (-)
Gene ID: HRGMv2_3984_29_11
Type: CAZyme
Location: 12987 - 16085 (+)
Type: CAZyme
Location: 12987 - 16085 (+)
Gene ID: HRGMv2_3984_29_12
Type:
Location: 16155 - 17255 (+)
Type:
Location: 16155 - 17255 (+)
Gene ID: HRGMv2_3984_29_13
Type: pfam
Location: 17258 - 17962 (+)
Type: pfam
Location: 17258 - 17962 (+)
Gene ID: HRGMv2_3984_29_14
Type: TC
Location: 18046 - 19455 (-)
Type: TC
Location: 18046 - 19455 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp019422485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.