Cluster: HRGMv2_3984_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3984
- CGC Family ID: CGCFAM_01677
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3984_28 | HRGMv2_3984_28_11 | 15938 | 17794 | + | 3.B.1.1.6 |
| pfam | HRGMv2_3984_28 | HRGMv2_3984_28_12 | 18016 | 19266 | + | AhpC-TSA |
| CAZyme | HRGMv2_3984_28 | HRGMv2_3984_28_13 | 19476 | 20675 | + | GT4 |
Gene ID: HRGMv2_3984_28_11
Type: TC
Location: 15938 - 17794 (+)
Type: TC
Location: 15938 - 17794 (+)
Gene ID: HRGMv2_3984_28_12
Type: pfam
Location: 18016 - 19266 (+)
Type: pfam
Location: 18016 - 19266 (+)
Gene ID: HRGMv2_3984_28_13
Type: CAZyme
Location: 19476 - 20675 (+)
Type: CAZyme
Location: 19476 - 20675 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp019422485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.