Cluster: HRGMv2_3983_CGC38
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_00361
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_89 | 136399 | 138990 | + | GH3 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_90 | 139509 | 141083 | - | GH28 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_91 | 141109 | 143523 | - | CE8 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_92 | 143568 | 145424 | - | Mfa_like_1 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_93 | 145480 | 147132 | - | DUF5123 |
| TC | HRGMv2_3983_6 | HRGMv2_3983_6_94 | 147153 | 149054 | - | 8.A.46.1.3 |
| TC | HRGMv2_3983_6 | HRGMv2_3983_6_95 | 149080 | 152292 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_96 | 152341 | 154734 | - | PL1_2 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_97 | 154770 | 156575 | - | DUF5123 |
| NULL(UNKNOWN) | HRGMv2_3983_6 | HRGMv2_3983_6_98 | 156589 | 157530 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_99 | 157800 | 159290 | - | PL1_2 |
| TF | HRGMv2_3983_6 | HRGMv2_3983_6_100 | 159407 | 160219 | - | LytTR |
| TC | HRGMv2_3983_6 | HRGMv2_3983_6_101 | 160223 | 161020 | - | 9.B.116.3.2 |
| NULL(UNKNOWN) | HRGMv2_3983_6 | HRGMv2_3983_6_102 | 161143 | 161319 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3983_6 | HRGMv2_3983_6_103 | 161375 | 164623 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_104 | 164649 | 166553 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_105 | 166572 | 168449 | + | DUF5123 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_106 | 168524 | 170167 | + | CE8 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_107 | 170265 | 171839 | + | PL1_2 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_108 | 171874 | 173541 | + | PL1_2 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_109 | 173577 | 175073 | + | PL1_2 |
Gene ID: HRGMv2_3983_6_89
Type: CAZyme
Location: 136399 - 138990 (+)
Type: CAZyme
Location: 136399 - 138990 (+)
Gene ID: HRGMv2_3983_6_90
Type: CAZyme
Location: 139509 - 141083 (-)
Type: CAZyme
Location: 139509 - 141083 (-)
Gene ID: HRGMv2_3983_6_91
Type: CAZyme
Location: 141109 - 143523 (-)
Type: CAZyme
Location: 141109 - 143523 (-)
Gene ID: HRGMv2_3983_6_92
Type: pfam
Location: 143568 - 145424 (-)
Type: pfam
Location: 143568 - 145424 (-)
Gene ID: HRGMv2_3983_6_93
Type: pfam
Location: 145480 - 147132 (-)
Type: pfam
Location: 145480 - 147132 (-)
Gene ID: HRGMv2_3983_6_94
Type: TC
Location: 147153 - 149054 (-)
Type: TC
Location: 147153 - 149054 (-)
Gene ID: HRGMv2_3983_6_95
Type: TC
Location: 149080 - 152292 (-)
Type: TC
Location: 149080 - 152292 (-)
Gene ID: HRGMv2_3983_6_96
Type: CAZyme
Location: 152341 - 154734 (-)
Type: CAZyme
Location: 152341 - 154734 (-)
Gene ID: HRGMv2_3983_6_97
Type: pfam
Location: 154770 - 156575 (-)
Type: pfam
Location: 154770 - 156575 (-)
Gene ID: HRGMv2_3983_6_98
Type:
Location: 156589 - 157530 (-)
Type:
Location: 156589 - 157530 (-)
Gene ID: HRGMv2_3983_6_99
Type: CAZyme
Location: 157800 - 159290 (-)
Type: CAZyme
Location: 157800 - 159290 (-)
Gene ID: HRGMv2_3983_6_100
Type: TF
Location: 159407 - 160219 (-)
Type: TF
Location: 159407 - 160219 (-)
Gene ID: HRGMv2_3983_6_101
Type: TC
Location: 160223 - 161020 (-)
Type: TC
Location: 160223 - 161020 (-)
Gene ID: HRGMv2_3983_6_102
Type:
Location: 161143 - 161319 (-)
Type:
Location: 161143 - 161319 (-)
Gene ID: HRGMv2_3983_6_103
Type: TC
Location: 161375 - 164623 (+)
Type: TC
Location: 161375 - 164623 (+)
Gene ID: HRGMv2_3983_6_104
Type: pfam
Location: 164649 - 166553 (+)
Type: pfam
Location: 164649 - 166553 (+)
Gene ID: HRGMv2_3983_6_105
Type: pfam
Location: 166572 - 168449 (+)
Type: pfam
Location: 166572 - 168449 (+)
Gene ID: HRGMv2_3983_6_106
Type: CAZyme
Location: 168524 - 170167 (+)
Type: CAZyme
Location: 168524 - 170167 (+)
Gene ID: HRGMv2_3983_6_107
Type: CAZyme
Location: 170265 - 171839 (+)
Type: CAZyme
Location: 170265 - 171839 (+)
Gene ID: HRGMv2_3983_6_108
Type: CAZyme
Location: 171874 - 173541 (+)
Type: CAZyme
Location: 171874 - 173541 (+)
Gene ID: HRGMv2_3983_6_109
Type: CAZyme
Location: 173577 - 175073 (+)
Type: CAZyme
Location: 173577 - 175073 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_6_91 | vegan > omnivore | 2.40434 | 0.00229 |
| HRGMv2_3983_6_92 | vegan > omnivore | 1.95965 | 0.00229 |
| HRGMv2_3983_6_93 | vegan > omnivore | 1.62765 | 0.00229 |
| HRGMv2_3983_6_94 | vegan > omnivore | 1.22395 | 0.00229 |
| HRGMv2_3983_6_95 | vegan > omnivore | 1.43215 | 0.00229 |
| HRGMv2_3983_6_95 | vegetarian > omnivore | 1.85883 | 0.03385 |
| HRGMv2_3983_6_96 | vegan > omnivore | 2.95241 | 0.00229 |
| HRGMv2_3983_6_96 | vegetarian > omnivore | 1.57774 | 0.01175 |
| HRGMv2_3983_6_97 | vegan > omnivore | 2.68949 | 0.00229 |
| HRGMv2_3983_6_97 | vegetarian > omnivore | 1.64249 | 0.01613 |
| HRGMv2_3983_6_98 | vegan > omnivore | 3.22306 | 0.00229 |
| HRGMv2_3983_6_98 | vegetarian > omnivore | 1.60403 | 0.03246 |
| HRGMv2_3983_6_99 | vegan > omnivore | 3.08076 | 0.00229 |
| HRGMv2_3983_6_99 | vegetarian > omnivore | 2.86073 | 0.01352 |
| HRGMv2_3983_6_102 | vegetarian > omnivore | 1.90580 | 0.03069 |
| HRGMv2_3983_6_102 | vegan > omnivore | 1.32341 | 0.00229 |
| HRGMv2_3983_6_103 | vegetarian > omnivore | 2.08948 | 0.01498 |
| HRGMv2_3983_6_104 | vegetarian > omnivore | 1.57258 | 0.03246 |
| HRGMv2_3983_6_104 | vegan > omnivore | 1.27775 | 0.00229 |