PROTEIN: HRGMv2_3983_6_98
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Protein File & Metadata
Source:
HRGMv2_3983_6_98.pdb
Genome ID:
Protein ID:
HRGMv2_3983_6_98
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Protein Sequence
MRSMNPILMN IFKLYKLIFM KHLASLFLLS FLLCCSCSQQ MDDEWKPNEQ LPNEPETHPV 60 GVSFSRASLE TFAEQGITEI GIYVYLTDSM VYGKNLPLNN GDIKVNLPLG ESLQTFVVAN 120 AERLVDTDSL SKVVVYQDAY AQKPVYISEV TGFTSDNSVS SLKIELKRLV GQAVFQPKET 180 EEELNAITRF DQLNVTFTNV AVGYKVKSKE CIIEDVTVST NLSTGFGASV YSFPTIKGDS 240 RTSVDVTYLK GGEEVNRIIS PLDTGIGFES SKRSTVHMKI TDENYLDEPW SLIRTVAYKG 300 VLAHPFTIEV SEF 313
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-I3YKC4-F1-model_v4 | GH28 | 55 | 313 | 32 | 272 | 0.4415 |
0.7983 |
| AF-A0A4V0ZPZ7-F1-model_v4 | GH18 | 46 | 313 | 19 | 306 | 0.4321 |
0.7224 |
| AF-A0A4Y1WMN6-F1-model_v4 | GH28 | 56 | 306 | 23 | 376 | 0.4193 |
0.7209 |
| A0A412C4E4 | PL0 | 56 | 305 | 44 | 514 | 0.4118 |
0.66 |
| D7J0Z9 | GH28 | 57 | 305 | 25 | 378 | 0.4096 |
0.7136 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| I3YKC4 | GH28 | 55 | 313 | 32 | 272 | 0.4415 |
0.7983 |
| A0A4V0ZPZ7 | GH18 | 46 | 313 | 19 | 306 | 0.4321 |
0.7224 |
| A0A4Y1WMN6 | GH28 | 56 | 306 | 23 | 376 | 0.4193 |
0.7209 |
| D7J0Z9 | GH28 | 57 | 305 | 25 | 378 | 0.4096 |
0.7136 |
| A0A413JCB6 | GH28 | 68 | 299 | 58 | 498 | 0.3753 |
0.6937 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 5cag-assembly1.cif.gz_A | 18 | 292 | 2 | 282 | 0.6174 |
0.6877 |
| 5nfi-assembly1.cif.gz_B | 56 | 312 | 1 | 272 | 0.5991 |
0.7037 |
| 3gf8-assembly1.cif.gz_A | 57 | 312 | 1 | 275 | 0.5942 |
0.7069 |
| 4qdg-assembly1.cif.gz_A | 57 | 312 | 6 | 295 | 0.5859 |
0.7148 |
| 3pay-assembly1.cif.gz_B | 58 | 310 | 13 | 299 | 0.5838 |
0.7271 |
| 3pay-assembly1.cif.gz_D | 58 | 309 | 13 | 302 | 0.5801 |
0.7291 |
| 3pay-assembly1.cif.gz_C | 58 | 309 | 10 | 296 | 0.5793 |
0.7223 |
| 3pay-assembly1.cif.gz_A | 58 | 309 | 13 | 291 | 0.5744 |
0.7094 |
| 4k4k-assembly2.cif.gz_B | 57 | 313 | 2 | 257 | 0.5637 |
0.6477 |
| 4gpv-assembly1.cif.gz_A | 54 | 313 | 5 | 321 | 0.5623 |
0.7015 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-A0PA81-F1-model_v4 | 55 | 313 | 30 | 294 | 0.598 |
0.7218 |
| AF-A0PA72-F1-model_v4 | 55 | 313 | 30 | 294 | 0.595 |
0.7205 |
| AF-A7LXW1-F1-model_v4 | 19 | 292 | 16 | 304 | 0.5824 |
0.696 |
| AF-A6LHQ9-F1-model_v4 | 45 | 313 | 23 | 309 | 0.5348 |
0.6411 |
| AF-P0C940-F1-model_v4 | 25 | 313 | 14 | 373 | 0.531 |
0.6452 |
| AF-B2RH54-F1-model_v4 | 24 | 313 | 12 | 373 | 0.5305 |
0.6434 |
| AF-Q51825-F1-model_v4 | 24 | 313 | 13 | 376 | 0.5304 |
0.6444 |
| AF-A7UZ95-F1-model_v4 | 57 | 313 | 32 | 291 | 0.5294 |
0.6484 |
| AF-Q51826-F1-model_v4 | 28 | 313 | 16 | 379 | 0.5282 |
0.6508 |
| AF-Q51822-F1-model_v4 | 27 | 313 | 13 | 374 | 0.528 |
0.6462 |