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Cluster: HRGMv2_3983_CGC127

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_4 2595 3890 + GH23
STP HRGMv2_3983_42 HRGMv2_3983_42_5 3963 6209 + HD
NULL(UNKNOWN) HRGMv2_3983_42 HRGMv2_3983_42_6 6222 8279 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_7 8300 9514 - GH105
NULL(UNKNOWN) HRGMv2_3983_42 HRGMv2_3983_42_8 9528 11537 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_3983_42 HRGMv2_3983_42_9 11569 12546 - S09.UPB
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_10 12543 13313 - CE12
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_11 13359 14939 - GH28
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_12 14988 18014 - GH2
NULL(UNKNOWN) HRGMv2_3983_42 HRGMv2_3983_42_13 18061 19776 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3983_42 HRGMv2_3983_42_14 19788 21617 - 8.A.46.1.3
TC HRGMv2_3983_42 HRGMv2_3983_42_15 21630 24893 - 1.B.14.6.1
TF HRGMv2_3983_42 HRGMv2_3983_42_16 24914 28825 - HTH_AraC
TF HRGMv2_3983_42 HRGMv2_3983_42_17 29107 29448 - MerR
TC HRGMv2_3983_42 HRGMv2_3983_42_18 29472 30440 - 1.A.34.1.3
pfam HRGMv2_3983_42 HRGMv2_3983_42_19 30547 33165 + tRNA-synt_2c | DHHA1 | tRNA_SAD
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_20 33340 35577 + GH92
TF HRGMv2_3983_42 HRGMv2_3983_42_21 35607 36161 + GerE
STP HRGMv2_3983_42 HRGMv2_3983_42_22 36214 37206 + FecR
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_23 37249 39528 + GH92
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_24 39525 41795 + GH92
pfam HRGMv2_3983_42 HRGMv2_3983_42_25 41941 42375 + DUF6078
pfam HRGMv2_3983_42 HRGMv2_3983_42_26 42617 44146 - BACON | BACON | BACON_2 | BACON_2
CAZyme HRGMv2_3983_42 HRGMv2_3983_42_27 44172 45578 - GH18
Gene ID: HRGMv2_3983_42_4
Type: CAZyme
Location: 2595 - 3890 (+)
Gene ID: HRGMv2_3983_42_5
Type: STP
Location: 3963 - 6209 (+)
Gene ID: HRGMv2_3983_42_6
Type:
Location: 6222 - 8279 (-)
Gene ID: HRGMv2_3983_42_7
Type: CAZyme
Location: 8300 - 9514 (-)
Gene ID: HRGMv2_3983_42_8
Type:
Location: 9528 - 11537 (-)
Gene ID: HRGMv2_3983_42_9
Type: peptidase
Location: 11569 - 12546 (-)
Gene ID: HRGMv2_3983_42_10
Type: CAZyme
Location: 12543 - 13313 (-)
Gene ID: HRGMv2_3983_42_11
Type: CAZyme
Location: 13359 - 14939 (-)
Gene ID: HRGMv2_3983_42_12
Type: CAZyme
Location: 14988 - 18014 (-)
Gene ID: HRGMv2_3983_42_13
Type:
Location: 18061 - 19776 (-)
Gene ID: HRGMv2_3983_42_14
Type: TC
Location: 19788 - 21617 (-)
Gene ID: HRGMv2_3983_42_15
Type: TC
Location: 21630 - 24893 (-)
Gene ID: HRGMv2_3983_42_16
Type: TF
Location: 24914 - 28825 (-)
Gene ID: HRGMv2_3983_42_17
Type: TF
Location: 29107 - 29448 (-)
Gene ID: HRGMv2_3983_42_18
Type: TC
Location: 29472 - 30440 (-)
Gene ID: HRGMv2_3983_42_19
Type: pfam
Location: 30547 - 33165 (+)
Gene ID: HRGMv2_3983_42_20
Type: CAZyme
Location: 33340 - 35577 (+)
Gene ID: HRGMv2_3983_42_21
Type: TF
Location: 35607 - 36161 (+)
Gene ID: HRGMv2_3983_42_22
Type: STP
Location: 36214 - 37206 (+)
Gene ID: HRGMv2_3983_42_23
Type: CAZyme
Location: 37249 - 39528 (+)
Gene ID: HRGMv2_3983_42_24
Type: CAZyme
Location: 39525 - 41795 (+)
Gene ID: HRGMv2_3983_42_25
Type: pfam
Location: 41941 - 42375 (+)
Gene ID: HRGMv2_3983_42_26
Type: pfam
Location: 42617 - 44146 (-)
Gene ID: HRGMv2_3983_42_27
Type: CAZyme
Location: 44172 - 45578 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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