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Cluster: HRGMv2_3982_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3982_11 HRGMv2_3982_11_44 50163 53330 - 1.B.14.6.3
TC HRGMv2_3982_11 HRGMv2_3982_11_45 53947 54378 + 1.A.22.1.1
pfam HRGMv2_3982_11 HRGMv2_3982_11_46 54558 55034 - C_GCAxxG_C_C
CAZyme HRGMv2_3982_11 HRGMv2_3982_11_47 55133 56236 + GH43_24
pfam HRGMv2_3982_11 HRGMv2_3982_11_48 56261 59233 + PPDK_N
peptidase HRGMv2_3982_11 HRGMv2_3982_11_49 59276 60223 + G05.UPW
CAZyme HRGMv2_3982_11 HRGMv2_3982_11_50 60263 61369 - GH93
CAZyme HRGMv2_3982_11 HRGMv2_3982_11_51 61672 65940 + CBM32 | CBM32 | GH2
pfam HRGMv2_3982_11 HRGMv2_3982_11_52 66020 66526 - Arm-DNA-bind_5
TC HRGMv2_3982_11 HRGMv2_3982_11_53 67102 68985 - 3.B.1.1.6
TC HRGMv2_3982_11 HRGMv2_3982_11_54 69113 70672 + 2.A.21.5.4
Gene ID: HRGMv2_3982_11_44
Type: TC
Location: 50163 - 53330 (-)
Gene ID: HRGMv2_3982_11_45
Type: TC
Location: 53947 - 54378 (+)
Gene ID: HRGMv2_3982_11_46
Type: pfam
Location: 54558 - 55034 (-)
Gene ID: HRGMv2_3982_11_47
Type: CAZyme
Location: 55133 - 56236 (+)
Gene ID: HRGMv2_3982_11_48
Type: pfam
Location: 56261 - 59233 (+)
Gene ID: HRGMv2_3982_11_49
Type: peptidase
Location: 59276 - 60223 (+)
Gene ID: HRGMv2_3982_11_50
Type: CAZyme
Location: 60263 - 61369 (-)
Gene ID: HRGMv2_3982_11_51
Type: CAZyme
Location: 61672 - 65940 (+)
Gene ID: HRGMv2_3982_11_52
Type: pfam
Location: 66020 - 66526 (-)
Gene ID: HRGMv2_3982_11_53
Type: TC
Location: 67102 - 68985 (-)
Gene ID: HRGMv2_3982_11_54
Type: TC
Location: 69113 - 70672 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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