Cluster: HRGMv2_3982_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3982
- CGC Family ID: CGCFAM_03093
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3982_8 | HRGMv2_3982_8_53 | 64799 | 65782 | - | GH5_7 |
| CAZyme | HRGMv2_3982_8 | HRGMv2_3982_8_54 | 65831 | 67261 | - | GH140 |
| NULL(UNKNOWN) | HRGMv2_3982_8 | HRGMv2_3982_8_55 | 67289 | 68383 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3982_8 | HRGMv2_3982_8_56 | 68570 | 69577 | + | GntR |
| CAZyme | HRGMv2_3982_8 | HRGMv2_3982_8_57 | 69660 | 71297 | - | GH33 |
| pfam | HRGMv2_3982_8 | HRGMv2_3982_8_58 | 71529 | 72545 | - | Gp_dh_N | Gp_dh_C |
| TC | HRGMv2_3982_8 | HRGMv2_3982_8_59 | 72857 | 73645 | - | 3.A.1.27.5 |
| TC | HRGMv2_3982_8 | HRGMv2_3982_8_60 | 73650 | 74384 | - | 3.A.1.27.2 |
| NULL(UNKNOWN) | HRGMv2_3982_8 | HRGMv2_3982_8_61 | 74575 | 74922 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3982_8 | HRGMv2_3982_8_62 | 74992 | 75354 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3982_8 | HRGMv2_3982_8_63 | 75528 | 76613 | - | GH43_18 |
Gene ID: HRGMv2_3982_8_53
Type: CAZyme
Location: 64799 - 65782 (-)
Type: CAZyme
Location: 64799 - 65782 (-)
Gene ID: HRGMv2_3982_8_54
Type: CAZyme
Location: 65831 - 67261 (-)
Type: CAZyme
Location: 65831 - 67261 (-)
Gene ID: HRGMv2_3982_8_55
Type:
Location: 67289 - 68383 (-)
Type:
Location: 67289 - 68383 (-)
Gene ID: HRGMv2_3982_8_56
Type: TF
Location: 68570 - 69577 (+)
Type: TF
Location: 68570 - 69577 (+)
Gene ID: HRGMv2_3982_8_57
Type: CAZyme
Location: 69660 - 71297 (-)
Type: CAZyme
Location: 69660 - 71297 (-)
Gene ID: HRGMv2_3982_8_58
Type: pfam
Location: 71529 - 72545 (-)
Type: pfam
Location: 71529 - 72545 (-)
Gene ID: HRGMv2_3982_8_59
Type: TC
Location: 72857 - 73645 (-)
Type: TC
Location: 72857 - 73645 (-)
Gene ID: HRGMv2_3982_8_60
Type: TC
Location: 73650 - 74384 (-)
Type: TC
Location: 73650 - 74384 (-)
Gene ID: HRGMv2_3982_8_61
Type:
Location: 74575 - 74922 (-)
Type:
Location: 74575 - 74922 (-)
Gene ID: HRGMv2_3982_8_62
Type:
Location: 74992 - 75354 (-)
Type:
Location: 74992 - 75354 (-)
Gene ID: HRGMv2_3982_8_63
Type: CAZyme
Location: 75528 - 76613 (-)
Type: CAZyme
Location: 75528 - 76613 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022767745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3982_8_58 | vegetarian > omnivore | 1.62276 | 0.03783 |
| HRGMv2_3982_8_58 | vegetarian > vegan | 1.12749 | 0.01796 |