Cluster: HRGMv2_3982_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3982
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3982_5 | HRGMv2_3982_5_29 | 39135 | 40562 | - | 2.A.114.1.4 |
| peptidase | HRGMv2_3982_5 | HRGMv2_3982_5_30 | 41026 | 42099 | + | C59.001 |
| CAZyme | HRGMv2_3982_5 | HRGMv2_3982_5_31 | 42212 | 44455 | + | GH92 |
| pfam | HRGMv2_3982_5 | HRGMv2_3982_5_32 | 44554 | 45591 | + | Beta_elim_lyase |
| STP | HRGMv2_3982_5 | HRGMv2_3982_5_33 | 45698 | 46804 | + | TPR_1 |
| TC | HRGMv2_3982_5 | HRGMv2_3982_5_34 | 47734 | 49083 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_3982_5_29
Type: TC
Location: 39135 - 40562 (-)
Type: TC
Location: 39135 - 40562 (-)
Gene ID: HRGMv2_3982_5_30
Type: peptidase
Location: 41026 - 42099 (+)
Type: peptidase
Location: 41026 - 42099 (+)
Gene ID: HRGMv2_3982_5_31
Type: CAZyme
Location: 42212 - 44455 (+)
Type: CAZyme
Location: 42212 - 44455 (+)
Gene ID: HRGMv2_3982_5_32
Type: pfam
Location: 44554 - 45591 (+)
Type: pfam
Location: 44554 - 45591 (+)
Gene ID: HRGMv2_3982_5_33
Type: STP
Location: 45698 - 46804 (+)
Type: STP
Location: 45698 - 46804 (+)
Gene ID: HRGMv2_3982_5_34
Type: TC
Location: 47734 - 49083 (+)
Type: TC
Location: 47734 - 49083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022767745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.