Cluster: HRGMv2_3982_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3982
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3982_4 | HRGMv2_3982_4_141 | 168073 | 168999 | + | 1.A.23.2.1 |
| pfam | HRGMv2_3982_4 | HRGMv2_3982_4_142 | 169048 | 169485 | + | DUF5606 | DUF6852 |
| CAZyme | HRGMv2_3982_4 | HRGMv2_3982_4_143 | 169613 | 170626 | - | GH43_3 |
| pfam | HRGMv2_3982_4 | HRGMv2_3982_4_144 | 170895 | 172673 | - | tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1 |
| TC | HRGMv2_3982_4 | HRGMv2_3982_4_145 | 172898 | 174184 | + | 9.A.40.2.4 |
Gene ID: HRGMv2_3982_4_141
Type: TC
Location: 168073 - 168999 (+)
Type: TC
Location: 168073 - 168999 (+)
Gene ID: HRGMv2_3982_4_142
Type: pfam
Location: 169048 - 169485 (+)
Type: pfam
Location: 169048 - 169485 (+)
Gene ID: HRGMv2_3982_4_143
Type: CAZyme
Location: 169613 - 170626 (-)
Type: CAZyme
Location: 169613 - 170626 (-)
Gene ID: HRGMv2_3982_4_144
Type: pfam
Location: 170895 - 172673 (-)
Type: pfam
Location: 170895 - 172673 (-)
Gene ID: HRGMv2_3982_4_145
Type: TC
Location: 172898 - 174184 (+)
Type: TC
Location: 172898 - 174184 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022767745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3982_4_142 | vegetarian > vegan | 2.01234 | 0.00557 |