Cluster: HRGMv2_3982_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3982
- CGC Family ID: CGCFAM_04386
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3982_1 | HRGMv2_3982_1_28 | 27845 | 29260 | - | GH109 |
| CAZyme | HRGMv2_3982_1 | HRGMv2_3982_1_29 | 29304 | 30956 | - | GH20 |
| TF | HRGMv2_3982_1 | HRGMv2_3982_1_30 | 31208 | 32011 | + | 0040266 |
| NULL(UNKNOWN) | HRGMv2_3982_1 | HRGMv2_3982_1_31 | 32018 | 33787 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3982_1 | HRGMv2_3982_1_32 | 33843 | 37103 | + | 9.A.25.1.1 |
Gene ID: HRGMv2_3982_1_28
Type: CAZyme
Location: 27845 - 29260 (-)
Type: CAZyme
Location: 27845 - 29260 (-)
Gene ID: HRGMv2_3982_1_29
Type: CAZyme
Location: 29304 - 30956 (-)
Type: CAZyme
Location: 29304 - 30956 (-)
Gene ID: HRGMv2_3982_1_30
Type: TF
Location: 31208 - 32011 (+)
Type: TF
Location: 31208 - 32011 (+)
Gene ID: HRGMv2_3982_1_31
Type:
Location: 32018 - 33787 (+)
Type:
Location: 32018 - 33787 (+)
Gene ID: HRGMv2_3982_1_32
Type: TC
Location: 33843 - 37103 (+)
Type: TC
Location: 33843 - 37103 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp022767745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.