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Cluster: HRGMv2_3982_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3982_3 HRGMv2_3982_3_3 4104 7199 - 1.B.14.6.1
pfam HRGMv2_3982_3 HRGMv2_3982_3_4 7897 8082 + Ribosomal_L35p
pfam HRGMv2_3982_3 HRGMv2_3982_3_5 8186 8530 + Ribosomal_L20
CAZyme HRGMv2_3982_3 HRGMv2_3982_3_6 8898 9932 - CBM6
pfam HRGMv2_3982_3 HRGMv2_3982_3_7 9971 10924 - BT_3987-like_N | BT_3044-like_C | DUF4973
pfam HRGMv2_3982_3 HRGMv2_3982_3_8 10952 12949 - SusD_RagB | SusD-like_3
TC HRGMv2_3982_3 HRGMv2_3982_3_9 12970 16050 - 1.B.14.6.1
pfam HRGMv2_3982_3 HRGMv2_3982_3_10 16073 17470 - NHL | TIG
NULL(UNKNOWN) HRGMv2_3982_3 HRGMv2_3982_3_11 18259 18555 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3982_3 HRGMv2_3982_3_12 18577 21435 + GH2
Gene ID: HRGMv2_3982_3_3
Type: TC
Location: 4104 - 7199 (-)
Gene ID: HRGMv2_3982_3_4
Type: pfam
Location: 7897 - 8082 (+)
Gene ID: HRGMv2_3982_3_5
Type: pfam
Location: 8186 - 8530 (+)
Gene ID: HRGMv2_3982_3_6
Type: CAZyme
Location: 8898 - 9932 (-)
Gene ID: HRGMv2_3982_3_7
Type: pfam
Location: 9971 - 10924 (-)
Gene ID: HRGMv2_3982_3_8
Type: pfam
Location: 10952 - 12949 (-)
Gene ID: HRGMv2_3982_3_9
Type: TC
Location: 12970 - 16050 (-)
Gene ID: HRGMv2_3982_3_10
Type: pfam
Location: 16073 - 17470 (-)
Gene ID: HRGMv2_3982_3_11
Type:
Location: 18259 - 18555 (-)
Gene ID: HRGMv2_3982_3_12
Type: CAZyme
Location: 18577 - 21435 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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