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Cluster: HRGMv2_3980_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3980_4 HRGMv2_3980_4_116 124614 126341 - GH13_38
pfam HRGMv2_3980_4 HRGMv2_3980_4_117 126365 127165 - Patatin
pfam HRGMv2_3980_4 HRGMv2_3980_4_118 127520 128095 + Sua5_yciO_yrdC
TC HRGMv2_3980_4 HRGMv2_3980_4_119 128128 129564 + 9.B.18.1.3
TC HRGMv2_3980_4 HRGMv2_3980_4_120 129596 131401 + 2.A.49.6.1
pfam HRGMv2_3980_4 HRGMv2_3980_4_121 131461 132420 + Formyl_trans_N | Formyl_trans_C
TC HRGMv2_3980_4 HRGMv2_3980_4_122 132594 133547 + 3.A.5.1.1
Gene ID: HRGMv2_3980_4_116
Type: CAZyme
Location: 124614 - 126341 (-)
Gene ID: HRGMv2_3980_4_117
Type: pfam
Location: 126365 - 127165 (-)
Gene ID: HRGMv2_3980_4_118
Type: pfam
Location: 127520 - 128095 (+)
Gene ID: HRGMv2_3980_4_119
Type: TC
Location: 128128 - 129564 (+)
Gene ID: HRGMv2_3980_4_120
Type: TC
Location: 129596 - 131401 (+)
Gene ID: HRGMv2_3980_4_121
Type: pfam
Location: 131461 - 132420 (+)
Gene ID: HRGMv2_3980_4_122
Type: TC
Location: 132594 - 133547 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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