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Cluster: HRGMv2_3978_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3978_6 HRGMv2_3978_6_142 171906 174074 - GH163
CAZyme HRGMv2_3978_6 HRGMv2_3978_6_143 174298 176850 + GH116
NULL(UNKNOWN) HRGMv2_3978_6 HRGMv2_3978_6_144 176962 178485 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3978_6 HRGMv2_3978_6_145 178501 179331 - GH117
CAZyme HRGMv2_3978_6 HRGMv2_3978_6_146 179362 181029 - GH29
TF HRGMv2_3978_6 HRGMv2_3978_6_147 181150 182016 + HTH_AraC | HTH_AraC
pfam HRGMv2_3978_6 HRGMv2_3978_6_148 182019 184388 - FtsX | FtsX | MacB_PCD | MacB_PCD
TC HRGMv2_3978_6 HRGMv2_3978_6_149 184390 185073 - 3.A.1.122.2
Gene ID: HRGMv2_3978_6_142
Type: CAZyme
Location: 171906 - 174074 (-)
Gene ID: HRGMv2_3978_6_143
Type: CAZyme
Location: 174298 - 176850 (+)
Gene ID: HRGMv2_3978_6_144
Type:
Location: 176962 - 178485 (-)
Gene ID: HRGMv2_3978_6_145
Type: CAZyme
Location: 178501 - 179331 (-)
Gene ID: HRGMv2_3978_6_146
Type: CAZyme
Location: 179362 - 181029 (-)
Gene ID: HRGMv2_3978_6_147
Type: TF
Location: 181150 - 182016 (+)
Gene ID: HRGMv2_3978_6_148
Type: pfam
Location: 182019 - 184388 (-)
Gene ID: HRGMv2_3978_6_149
Type: TC
Location: 184390 - 185073 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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