Cluster: HRGMv2_3899_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_6 | HRGMv2_3899_6_15 | 13444 | 14604 | + | GT4 |
| pfam | HRGMv2_3899_6 | HRGMv2_3899_6_16 | 14627 | 15952 | + | UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| NULL(UNKNOWN) | HRGMv2_3899_6 | HRGMv2_3899_6_17 | 16792 | 17103 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3899_6 | HRGMv2_3899_6_18 | 17463 | 18713 | + | GT4 |
| CAZyme | HRGMv2_3899_6 | HRGMv2_3899_6_19 | 18710 | 19696 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3899_6 | HRGMv2_3899_6_20 | 19698 | 20246 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3899_6 | HRGMv2_3899_6_21 | 20284 | 22218 | + | GHMP_kinases_N | NTP_transferase |
| CAZyme | HRGMv2_3899_6 | HRGMv2_3899_6_22 | 22380 | 23306 | + | GT2 |
| pfam | HRGMv2_3899_6 | HRGMv2_3899_6_23 | 23360 | 23824 | + | Alg14 |
| pfam | HRGMv2_3899_6 | HRGMv2_3899_6_24 | 23821 | 24291 | + | Glyco_tran_28_C |
| CAZyme | HRGMv2_3899_6 | HRGMv2_3899_6_25 | 24504 | 25256 | + | GT2 |
| TC | HRGMv2_3899_6 | HRGMv2_3899_6_26 | 25639 | 27048 | + | 9.B.18.1.1 |
| NULL(UNKNOWN) | HRGMv2_3899_6 | HRGMv2_3899_6_27 | 27020 | 27172 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3899_6 | HRGMv2_3899_6_28 | 27496 | 28938 | - | GH28 |
Gene ID: HRGMv2_3899_6_15
Type: CAZyme
Location: 13444 - 14604 (+)
Type: CAZyme
Location: 13444 - 14604 (+)
Gene ID: HRGMv2_3899_6_16
Type: pfam
Location: 14627 - 15952 (+)
Type: pfam
Location: 14627 - 15952 (+)
Gene ID: HRGMv2_3899_6_17
Type:
Location: 16792 - 17103 (-)
Type:
Location: 16792 - 17103 (-)
Gene ID: HRGMv2_3899_6_18
Type: CAZyme
Location: 17463 - 18713 (+)
Type: CAZyme
Location: 17463 - 18713 (+)
Gene ID: HRGMv2_3899_6_19
Type: CAZyme
Location: 18710 - 19696 (+)
Type: CAZyme
Location: 18710 - 19696 (+)
Gene ID: HRGMv2_3899_6_20
Type:
Location: 19698 - 20246 (+)
Type:
Location: 19698 - 20246 (+)
Gene ID: HRGMv2_3899_6_21
Type: pfam
Location: 20284 - 22218 (+)
Type: pfam
Location: 20284 - 22218 (+)
Gene ID: HRGMv2_3899_6_22
Type: CAZyme
Location: 22380 - 23306 (+)
Type: CAZyme
Location: 22380 - 23306 (+)
Gene ID: HRGMv2_3899_6_23
Type: pfam
Location: 23360 - 23824 (+)
Type: pfam
Location: 23360 - 23824 (+)
Gene ID: HRGMv2_3899_6_24
Type: pfam
Location: 23821 - 24291 (+)
Type: pfam
Location: 23821 - 24291 (+)
Gene ID: HRGMv2_3899_6_25
Type: CAZyme
Location: 24504 - 25256 (+)
Type: CAZyme
Location: 24504 - 25256 (+)
Gene ID: HRGMv2_3899_6_26
Type: TC
Location: 25639 - 27048 (+)
Type: TC
Location: 25639 - 27048 (+)
Gene ID: HRGMv2_3899_6_27
Type:
Location: 27020 - 27172 (-)
Type:
Location: 27020 - 27172 (-)
Gene ID: HRGMv2_3899_6_28
Type: CAZyme
Location: 27496 - 28938 (-)
Type: CAZyme
Location: 27496 - 28938 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.