Cluster: HRGMv2_3899_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_4 | HRGMv2_3899_4_28 | 28398 | 28967 | + | 9.B.29.3.6 |
| pfam | HRGMv2_3899_4 | HRGMv2_3899_4_29 | 28974 | 29429 | + | SmpB |
| pfam | HRGMv2_3899_4 | HRGMv2_3899_4_30 | 29419 | 32898 | - | DEAD | UvrD-helicase | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| CAZyme | HRGMv2_3899_4 | HRGMv2_3899_4_31 | 32989 | 34365 | - | GH23 |
Gene ID: HRGMv2_3899_4_28
Type: TC
Location: 28398 - 28967 (+)
Type: TC
Location: 28398 - 28967 (+)
Gene ID: HRGMv2_3899_4_29
Type: pfam
Location: 28974 - 29429 (+)
Type: pfam
Location: 28974 - 29429 (+)
Gene ID: HRGMv2_3899_4_30
Type: pfam
Location: 29419 - 32898 (-)
Type: pfam
Location: 29419 - 32898 (-)
Gene ID: HRGMv2_3899_4_31
Type: CAZyme
Location: 32989 - 34365 (-)
Type: CAZyme
Location: 32989 - 34365 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.