Cluster: HRGMv2_3899_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_102 | HRGMv2_3899_102_2 | 1360 | 2640 | - | GH23 |
| pfam | HRGMv2_3899_102 | HRGMv2_3899_102_3 | 2646 | 3434 | - | DUF5683 |
| pfam | HRGMv2_3899_102 | HRGMv2_3899_102_4 | 3445 | 4338 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | HRGMv2_3899_102 | HRGMv2_3899_102_5 | 4343 | 5107 | - | 8.A.3.2.3 |
| pfam | HRGMv2_3899_102 | HRGMv2_3899_102_6 | 5294 | 6058 | + | SurE |
| CAZyme | HRGMv2_3899_102 | HRGMv2_3899_102_7 | 6060 | 7199 | + | GT19 |
Gene ID: HRGMv2_3899_102_2
Type: CAZyme
Location: 1360 - 2640 (-)
Type: CAZyme
Location: 1360 - 2640 (-)
Gene ID: HRGMv2_3899_102_3
Type: pfam
Location: 2646 - 3434 (-)
Type: pfam
Location: 2646 - 3434 (-)
Gene ID: HRGMv2_3899_102_4
Type: pfam
Location: 3445 - 4338 (-)
Type: pfam
Location: 3445 - 4338 (-)
Gene ID: HRGMv2_3899_102_5
Type: TC
Location: 4343 - 5107 (-)
Type: TC
Location: 4343 - 5107 (-)
Gene ID: HRGMv2_3899_102_6
Type: pfam
Location: 5294 - 6058 (+)
Type: pfam
Location: 5294 - 6058 (+)
Gene ID: HRGMv2_3899_102_7
Type: CAZyme
Location: 6060 - 7199 (+)
Type: CAZyme
Location: 6060 - 7199 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.