Cluster: HRGMv2_3899_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_71 | HRGMv2_3899_71_5 | 4427 | 6040 | - | 3.A.1.121.4 |
| TC | HRGMv2_3899_71 | HRGMv2_3899_71_6 | 6537 | 7118 | + | 3.A.8.1.1 |
| pfam | HRGMv2_3899_71 | HRGMv2_3899_71_7 | 7145 | 8302 | + | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| pfam | HRGMv2_3899_71 | HRGMv2_3899_71_8 | 8687 | 9166 | - | dCMP_cyt_deam_1 | dCMP_cyt_deam_2 |
| CAZyme | HRGMv2_3899_71 | HRGMv2_3899_71_9 | 9267 | 10151 | + | GH73 |
Gene ID: HRGMv2_3899_71_5
Type: TC
Location: 4427 - 6040 (-)
Type: TC
Location: 4427 - 6040 (-)
Gene ID: HRGMv2_3899_71_6
Type: TC
Location: 6537 - 7118 (+)
Type: TC
Location: 6537 - 7118 (+)
Gene ID: HRGMv2_3899_71_7
Type: pfam
Location: 7145 - 8302 (+)
Type: pfam
Location: 7145 - 8302 (+)
Gene ID: HRGMv2_3899_71_8
Type: pfam
Location: 8687 - 9166 (-)
Type: pfam
Location: 8687 - 9166 (-)
Gene ID: HRGMv2_3899_71_9
Type: CAZyme
Location: 9267 - 10151 (+)
Type: CAZyme
Location: 9267 - 10151 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.