Cluster: HRGMv2_3899_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_61 | HRGMv2_3899_61_7 | 7479 | 8696 | - | GT30 |
| pfam | HRGMv2_3899_61 | HRGMv2_3899_61_8 | 8696 | 10246 | - | tRNA-synt_1c | Anticodon_2 |
| STP | HRGMv2_3899_61 | HRGMv2_3899_61_9 | 10368 | 12410 | + | HD |
| TC | HRGMv2_3899_61 | HRGMv2_3899_61_10 | 12414 | 14873 | + | 3.A.11.3.1 |
Gene ID: HRGMv2_3899_61_7
Type: CAZyme
Location: 7479 - 8696 (-)
Type: CAZyme
Location: 7479 - 8696 (-)
Gene ID: HRGMv2_3899_61_8
Type: pfam
Location: 8696 - 10246 (-)
Type: pfam
Location: 8696 - 10246 (-)
Gene ID: HRGMv2_3899_61_9
Type: STP
Location: 10368 - 12410 (+)
Type: STP
Location: 10368 - 12410 (+)
Gene ID: HRGMv2_3899_61_10
Type: TC
Location: 12414 - 14873 (+)
Type: TC
Location: 12414 - 14873 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.