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Cluster: HRGMv2_3899_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3899_47 HRGMv2_3899_47_3 1797 3557 + 3.A.2.3.3
TC HRGMv2_3899_47 HRGMv2_3899_47_4 3523 4893 + 3.A.2.3.3
pfam HRGMv2_3899_47 HRGMv2_3899_47_5 4908 5513 + ATP-synt_D
TC HRGMv2_3899_47 HRGMv2_3899_47_6 5510 7339 + 3.A.2.3.3
pfam HRGMv2_3899_47 HRGMv2_3899_47_7 7366 7785 + ATP-synt_C | ATP-synt_C
CAZyme HRGMv2_3899_47 HRGMv2_3899_47_8 8230 9897 + GT3
CAZyme HRGMv2_3899_47 HRGMv2_3899_47_9 9931 12495 + GT35
Gene ID: HRGMv2_3899_47_3
Type: TC
Location: 1797 - 3557 (+)
Gene ID: HRGMv2_3899_47_4
Type: TC
Location: 3523 - 4893 (+)
Gene ID: HRGMv2_3899_47_5
Type: pfam
Location: 4908 - 5513 (+)
Gene ID: HRGMv2_3899_47_6
Type: TC
Location: 5510 - 7339 (+)
Gene ID: HRGMv2_3899_47_7
Type: pfam
Location: 7366 - 7785 (+)
Gene ID: HRGMv2_3899_47_8
Type: CAZyme
Location: 8230 - 9897 (+)
Gene ID: HRGMv2_3899_47_9
Type: CAZyme
Location: 9931 - 12495 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3899_47_4 vegetarian > vegan 1.03026 0.01287

🧭 Explore Read Mapping of CGC

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