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Cluster: HRGMv2_3899_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3899_42 HRGMv2_3899_42_4 3856 6963 + 1.B.14.6.13
TC HRGMv2_3899_42 HRGMv2_3899_42_5 6971 8566 + 8.A.46.2.1
pfam HRGMv2_3899_42 HRGMv2_3899_42_6 8680 9417 + adh_short | Epimerase | KR | NAD_binding_10 | adh_short_C2
CAZyme HRGMv2_3899_42 HRGMv2_3899_42_7 9857 11788 - GH141
CAZyme HRGMv2_3899_42 HRGMv2_3899_42_8 12068 14212 + GH2
CAZyme HRGMv2_3899_42 HRGMv2_3899_42_9 14223 15656 + GH29
CAZyme HRGMv2_3899_42 HRGMv2_3899_42_10 15848 17431 + GH28
pfam HRGMv2_3899_42 HRGMv2_3899_42_11 17753 18373 - DUF4923
TF HRGMv2_3899_42 HRGMv2_3899_42_12 18675 19112 - FUR
TC HRGMv2_3899_42 HRGMv2_3899_42_13 19129 20991 - 3.A.3.6.10
Gene ID: HRGMv2_3899_42_4
Type: TC
Location: 3856 - 6963 (+)
Gene ID: HRGMv2_3899_42_5
Type: TC
Location: 6971 - 8566 (+)
Gene ID: HRGMv2_3899_42_6
Type: pfam
Location: 8680 - 9417 (+)
Gene ID: HRGMv2_3899_42_7
Type: CAZyme
Location: 9857 - 11788 (-)
Gene ID: HRGMv2_3899_42_8
Type: CAZyme
Location: 12068 - 14212 (+)
Gene ID: HRGMv2_3899_42_9
Type: CAZyme
Location: 14223 - 15656 (+)
Gene ID: HRGMv2_3899_42_10
Type: CAZyme
Location: 15848 - 17431 (+)
Gene ID: HRGMv2_3899_42_11
Type: pfam
Location: 17753 - 18373 (-)
Gene ID: HRGMv2_3899_42_12
Type: TF
Location: 18675 - 19112 (-)
Gene ID: HRGMv2_3899_42_13
Type: TC
Location: 19129 - 20991 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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