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Cluster: HRGMv2_3899_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3899_41 HRGMv2_3899_41_9 14209 15309 + GT1
pfam HRGMv2_3899_41 HRGMv2_3899_41_10 15843 16787 - Metallophos
TC HRGMv2_3899_41 HRGMv2_3899_41_11 16992 19829 - 1.B.14.12.1
STP HRGMv2_3899_41 HRGMv2_3899_41_12 20136 21566 - HATPase_c | HisKA
TF HRGMv2_3899_41 HRGMv2_3899_41_13 21569 22258 - Trans_reg_C
TC HRGMv2_3899_41 HRGMv2_3899_41_14 22417 24006 + 2.A.49.6.1
TF HRGMv2_3899_41 HRGMv2_3899_41_15 24321 25202 + HTH_AraC
TC HRGMv2_3899_41 HRGMv2_3899_41_16 25304 25657 + 1.E.14.1.13
TC HRGMv2_3899_41 HRGMv2_3899_41_17 25638 26333 + 2.A.122.1.1
Gene ID: HRGMv2_3899_41_9
Type: CAZyme
Location: 14209 - 15309 (+)
Gene ID: HRGMv2_3899_41_10
Type: pfam
Location: 15843 - 16787 (-)
Gene ID: HRGMv2_3899_41_11
Type: TC
Location: 16992 - 19829 (-)
Gene ID: HRGMv2_3899_41_12
Type: STP
Location: 20136 - 21566 (-)
Gene ID: HRGMv2_3899_41_13
Type: TF
Location: 21569 - 22258 (-)
Gene ID: HRGMv2_3899_41_14
Type: TC
Location: 22417 - 24006 (+)
Gene ID: HRGMv2_3899_41_15
Type: TF
Location: 24321 - 25202 (+)
Gene ID: HRGMv2_3899_41_16
Type: TC
Location: 25304 - 25657 (+)
Gene ID: HRGMv2_3899_41_17
Type: TC
Location: 25638 - 26333 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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