Cluster: HRGMv2_3899_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_27 | HRGMv2_3899_27_3 | 2221 | 3843 | - | 1.B.9.4.2 |
| NULL(UNKNOWN) | HRGMv2_3899_27 | HRGMv2_3899_27_4 | 3873 | 5192 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3899_27 | HRGMv2_3899_27_5 | 5617 | 6459 | + | MTS | PrmA | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | HRGMv2_3899_27 | HRGMv2_3899_27_6 | 6582 | 7493 | - | GH25 |
Gene ID: HRGMv2_3899_27_3
Type: TC
Location: 2221 - 3843 (-)
Type: TC
Location: 2221 - 3843 (-)
Gene ID: HRGMv2_3899_27_4
Type:
Location: 3873 - 5192 (-)
Type:
Location: 3873 - 5192 (-)
Gene ID: HRGMv2_3899_27_5
Type: pfam
Location: 5617 - 6459 (+)
Type: pfam
Location: 5617 - 6459 (+)
Gene ID: HRGMv2_3899_27_6
Type: CAZyme
Location: 6582 - 7493 (-)
Type: CAZyme
Location: 6582 - 7493 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.