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Cluster: HRGMv2_3899_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3899_22 HRGMv2_3899_22_25 24969 25763 - GT2
CAZyme HRGMv2_3899_22 HRGMv2_3899_22_26 26342 27976 + GT83
CAZyme HRGMv2_3899_22 HRGMv2_3899_22_27 27979 28713 + GT2
TC HRGMv2_3899_22 HRGMv2_3899_22_28 28724 29356 + 2.A.123.4.1
pfam HRGMv2_3899_22 HRGMv2_3899_22_29 29353 30543 + GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
TC HRGMv2_3899_22 HRGMv2_3899_22_30 30545 31279 + 9.B.198.1.4
CAZyme HRGMv2_3899_22 HRGMv2_3899_22_31 31384 32283 + GT2
Gene ID: HRGMv2_3899_22_25
Type: CAZyme
Location: 24969 - 25763 (-)
Gene ID: HRGMv2_3899_22_26
Type: CAZyme
Location: 26342 - 27976 (+)
Gene ID: HRGMv2_3899_22_27
Type: CAZyme
Location: 27979 - 28713 (+)
Gene ID: HRGMv2_3899_22_28
Type: TC
Location: 28724 - 29356 (+)
Gene ID: HRGMv2_3899_22_29
Type: pfam
Location: 29353 - 30543 (+)
Gene ID: HRGMv2_3899_22_30
Type: TC
Location: 30545 - 31279 (+)
Gene ID: HRGMv2_3899_22_31
Type: CAZyme
Location: 31384 - 32283 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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