dbCAN Logo

Cluster: HRGMv2_3898_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3898_17 HRGMv2_3898_17_31 42352 43386 + 8.A.1.1.2
NULL(UNKNOWN) HRGMv2_3898_17 HRGMv2_3898_17_32 43386 44978 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3898_17 HRGMv2_3898_17_33 45094 45975 + HTH_AraC
CAZyme HRGMv2_3898_17 HRGMv2_3898_17_34 45981 46778 - GT2
pfam HRGMv2_3898_17 HRGMv2_3898_17_35 46796 48013 - Aminotran_1_2 | Aminotran_5 | DegT_DnrJ_EryC1
pfam HRGMv2_3898_17 HRGMv2_3898_17_36 48060 49424 - SUFBD_core | SufBD_N
TC HRGMv2_3898_17 HRGMv2_3898_17_37 49440 50201 - 3.A.1.144.4
Gene ID: HRGMv2_3898_17_31
Type: TC
Location: 42352 - 43386 (+)
Gene ID: HRGMv2_3898_17_32
Type:
Location: 43386 - 44978 (+)
Gene ID: HRGMv2_3898_17_33
Type: TF
Location: 45094 - 45975 (+)
Gene ID: HRGMv2_3898_17_34
Type: CAZyme
Location: 45981 - 46778 (-)
Gene ID: HRGMv2_3898_17_35
Type: pfam
Location: 46796 - 48013 (-)
Gene ID: HRGMv2_3898_17_36
Type: pfam
Location: 48060 - 49424 (-)
Gene ID: HRGMv2_3898_17_37
Type: TC
Location: 49440 - 50201 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List