Cluster: HRGMv2_3897_CGC47
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3897
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3897_28 | HRGMv2_3897_28_19 | 17707 | 18459 | + | 3.A.1.140.1 |
| pfam | HRGMv2_3897_28 | HRGMv2_3897_28_20 | 18576 | 19895 | + | AA_kinase | ACT_9 |
| pfam | HRGMv2_3897_28 | HRGMv2_3897_28_21 | 20040 | 21200 | + | Orn_DAP_Arg_deC | Orn_Arg_deC_N |
| CAZyme | HRGMv2_3897_28 | HRGMv2_3897_28_22 | 21357 | 22523 | + | GT2 |
| pfam | HRGMv2_3897_28 | HRGMv2_3897_28_23 | 22596 | 24746 | - | DUF5686 |
| TF | HRGMv2_3897_28 | HRGMv2_3897_28_24 | 24918 | 25619 | + | 0038753 |
| TC | HRGMv2_3897_28 | HRGMv2_3897_28_25 | 25692 | 26939 | - | 3.A.1.125.5 |
Gene ID: HRGMv2_3897_28_19
Type: TC
Location: 17707 - 18459 (+)
Type: TC
Location: 17707 - 18459 (+)
Gene ID: HRGMv2_3897_28_20
Type: pfam
Location: 18576 - 19895 (+)
Type: pfam
Location: 18576 - 19895 (+)
Gene ID: HRGMv2_3897_28_21
Type: pfam
Location: 20040 - 21200 (+)
Type: pfam
Location: 20040 - 21200 (+)
Gene ID: HRGMv2_3897_28_22
Type: CAZyme
Location: 21357 - 22523 (+)
Type: CAZyme
Location: 21357 - 22523 (+)
Gene ID: HRGMv2_3897_28_23
Type: pfam
Location: 22596 - 24746 (-)
Type: pfam
Location: 22596 - 24746 (-)
Gene ID: HRGMv2_3897_28_24
Type: TF
Location: 24918 - 25619 (+)
Type: TF
Location: 24918 - 25619 (+)
Gene ID: HRGMv2_3897_28_25
Type: TC
Location: 25692 - 26939 (-)
Type: TC
Location: 25692 - 26939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.