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Cluster: HRGMv2_3897_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3897_22 HRGMv2_3897_22_39 50638 51606 + 1.A.34.1.3
TF HRGMv2_3897_22 HRGMv2_3897_22_40 51647 51994 + MerR
STP HRGMv2_3897_22 HRGMv2_3897_22_41 52005 54290 - HD
CAZyme HRGMv2_3897_22 HRGMv2_3897_22_42 54400 55641 - GH23
pfam HRGMv2_3897_22 HRGMv2_3897_22_43 55645 56475 - DUF5683
pfam HRGMv2_3897_22 HRGMv2_3897_22_44 56489 57394 - ParBc | HTH_ParB | ParB_dimer
TC HRGMv2_3897_22 HRGMv2_3897_22_45 57400 58167 - 8.A.3.2.3
pfam HRGMv2_3897_22 HRGMv2_3897_22_46 58462 59229 + SurE
CAZyme HRGMv2_3897_22 HRGMv2_3897_22_47 59259 60410 + GT19
pfam HRGMv2_3897_22 HRGMv2_3897_22_48 60690 61538 - CTP_transf_1
TC HRGMv2_3897_22 HRGMv2_3897_22_49 61709 63802 - 3.A.16.1.1
Gene ID: HRGMv2_3897_22_39
Type: TC
Location: 50638 - 51606 (+)
Gene ID: HRGMv2_3897_22_40
Type: TF
Location: 51647 - 51994 (+)
Gene ID: HRGMv2_3897_22_41
Type: STP
Location: 52005 - 54290 (-)
Gene ID: HRGMv2_3897_22_42
Type: CAZyme
Location: 54400 - 55641 (-)
Gene ID: HRGMv2_3897_22_43
Type: pfam
Location: 55645 - 56475 (-)
Gene ID: HRGMv2_3897_22_44
Type: pfam
Location: 56489 - 57394 (-)
Gene ID: HRGMv2_3897_22_45
Type: TC
Location: 57400 - 58167 (-)
Gene ID: HRGMv2_3897_22_46
Type: pfam
Location: 58462 - 59229 (+)
Gene ID: HRGMv2_3897_22_47
Type: CAZyme
Location: 59259 - 60410 (+)
Gene ID: HRGMv2_3897_22_48
Type: pfam
Location: 60690 - 61538 (-)
Gene ID: HRGMv2_3897_22_49
Type: TC
Location: 61709 - 63802 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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