Cluster: HRGMv2_3897_CGC31
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3897
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3897_12 | HRGMv2_3897_12_12 | 14012 | 17155 | - | 1.B.14.6.2 |
| NULL(UNKNOWN) | HRGMv2_3897_12 | HRGMv2_3897_12_13 | 17178 | 17714 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_14 | 18046 | 19209 | + | GH109 |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_15 | 19206 | 20846 | - | GH136 |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_16 | 20952 | 24062 | - | GH2 |
| pfam | HRGMv2_3897_12 | HRGMv2_3897_12_17 | 24338 | 25300 | + | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored |
| pfam | HRGMv2_3897_12 | HRGMv2_3897_12_18 | 25386 | 25937 | - | Pro_CA |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_19 | 26089 | 28356 | - | GH89 |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_20 | 28412 | 30964 | - | GH95 |
| sulfatase | HRGMv2_3897_12 | HRGMv2_3897_12_21 | 30987 | 32828 | - | S1_15 |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_22 | 32882 | 35071 | - | GH20 |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_23 | 35128 | 36777 | - | GH27 |
Gene ID: HRGMv2_3897_12_12
Type: TC
Location: 14012 - 17155 (-)
Type: TC
Location: 14012 - 17155 (-)
Gene ID: HRGMv2_3897_12_13
Type:
Location: 17178 - 17714 (-)
Type:
Location: 17178 - 17714 (-)
Gene ID: HRGMv2_3897_12_14
Type: CAZyme
Location: 18046 - 19209 (+)
Type: CAZyme
Location: 18046 - 19209 (+)
Gene ID: HRGMv2_3897_12_15
Type: CAZyme
Location: 19206 - 20846 (-)
Type: CAZyme
Location: 19206 - 20846 (-)
Gene ID: HRGMv2_3897_12_16
Type: CAZyme
Location: 20952 - 24062 (-)
Type: CAZyme
Location: 20952 - 24062 (-)
Gene ID: HRGMv2_3897_12_17
Type: pfam
Location: 24338 - 25300 (+)
Type: pfam
Location: 24338 - 25300 (+)
Gene ID: HRGMv2_3897_12_18
Type: pfam
Location: 25386 - 25937 (-)
Type: pfam
Location: 25386 - 25937 (-)
Gene ID: HRGMv2_3897_12_19
Type: CAZyme
Location: 26089 - 28356 (-)
Type: CAZyme
Location: 26089 - 28356 (-)
Gene ID: HRGMv2_3897_12_20
Type: CAZyme
Location: 28412 - 30964 (-)
Type: CAZyme
Location: 28412 - 30964 (-)
Gene ID: HRGMv2_3897_12_21
Type: sulfatase
Location: 30987 - 32828 (-)
Type: sulfatase
Location: 30987 - 32828 (-)
Gene ID: HRGMv2_3897_12_22
Type: CAZyme
Location: 32882 - 35071 (-)
Type: CAZyme
Location: 32882 - 35071 (-)
Gene ID: HRGMv2_3897_12_23
Type: CAZyme
Location: 35128 - 36777 (-)
Type: CAZyme
Location: 35128 - 36777 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.