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Cluster: HRGMv2_3897_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3897_9 HRGMv2_3897_9_6 7018 8280 + GT4
CAZyme HRGMv2_3897_9 HRGMv2_3897_9_7 8293 9063 + GT2
sulfatase HRGMv2_3897_9 HRGMv2_3897_9_8 9214 9885 - S1_16
pfam HRGMv2_3897_9 HRGMv2_3897_9_9 10093 11805 - SusD_RagB | SusD-like_3
TC HRGMv2_3897_9 HRGMv2_3897_9_10 11828 15169 - 1.B.14.6.1
CAZyme HRGMv2_3897_9 HRGMv2_3897_9_11 15202 16827 - CBM93 | GH33
pfam HRGMv2_3897_9 HRGMv2_3897_9_12 16921 17370 - DUF386
TC HRGMv2_3897_9 HRGMv2_3897_9_13 17399 18646 - 2.A.1.14.14
Gene ID: HRGMv2_3897_9_6
Type: CAZyme
Location: 7018 - 8280 (+)
Gene ID: HRGMv2_3897_9_7
Type: CAZyme
Location: 8293 - 9063 (+)
Gene ID: HRGMv2_3897_9_8
Type: sulfatase
Location: 9214 - 9885 (-)
Gene ID: HRGMv2_3897_9_9
Type: pfam
Location: 10093 - 11805 (-)
Gene ID: HRGMv2_3897_9_10
Type: TC
Location: 11828 - 15169 (-)
Gene ID: HRGMv2_3897_9_11
Type: CAZyme
Location: 15202 - 16827 (-)
Gene ID: HRGMv2_3897_9_12
Type: pfam
Location: 16921 - 17370 (-)
Gene ID: HRGMv2_3897_9_13
Type: TC
Location: 17399 - 18646 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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