Cluster: HRGMv2_3897_CGC23
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_08521
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_76 | 95509 | 98469 | + | GH2 |
| TF | HRGMv2_3897_7 | HRGMv2_3897_7_77 | 98596 | 99468 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_3897_7 | HRGMv2_3897_7_78 | 99587 | 100666 | + | URO-D |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_79 | 100803 | 104180 | + | GH2 |
| TC | HRGMv2_3897_7 | HRGMv2_3897_7_80 | 104611 | 107862 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3897_7 | HRGMv2_3897_7_81 | 107880 | 109886 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_82 | 109991 | 112327 | + | GH35 |
| NULL(UNKNOWN) | HRGMv2_3897_7 | HRGMv2_3897_7_83 | 112366 | 114774 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_84 | 114827 | 116713 | + | GH97 |
| pfam | HRGMv2_3897_7 | HRGMv2_3897_7_85 | 116901 | 117824 | + | Phosphodiest | Metalloenzyme |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_86 | 117893 | 119344 | + | GH29 |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_87 | 119385 | 122123 | + | GH2 |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_88 | 122152 | 123210 | + | GH29 |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_89 | 123227 | 125503 | + | GH95 |
| TC | HRGMv2_3897_7 | HRGMv2_3897_7_90 | 125766 | 127337 | + | 2.A.21.3.2 |
| STP | HRGMv2_3897_7 | HRGMv2_3897_7_91 | 127393 | 128061 | + | B12-binding | B12-binding_2 |
| pfam | HRGMv2_3897_7 | HRGMv2_3897_7_92 | 128094 | 129092 | + | URO-D |
| CAZyme | HRGMv2_3897_7 | HRGMv2_3897_7_93 | 129105 | 130172 | + | GH29 |
Gene ID: HRGMv2_3897_7_76
Type: CAZyme
Location: 95509 - 98469 (+)
Type: CAZyme
Location: 95509 - 98469 (+)
Gene ID: HRGMv2_3897_7_77
Type: TF
Location: 98596 - 99468 (-)
Type: TF
Location: 98596 - 99468 (-)
Gene ID: HRGMv2_3897_7_78
Type: pfam
Location: 99587 - 100666 (+)
Type: pfam
Location: 99587 - 100666 (+)
Gene ID: HRGMv2_3897_7_79
Type: CAZyme
Location: 100803 - 104180 (+)
Type: CAZyme
Location: 100803 - 104180 (+)
Gene ID: HRGMv2_3897_7_80
Type: TC
Location: 104611 - 107862 (+)
Type: TC
Location: 104611 - 107862 (+)
Gene ID: HRGMv2_3897_7_81
Type: pfam
Location: 107880 - 109886 (+)
Type: pfam
Location: 107880 - 109886 (+)
Gene ID: HRGMv2_3897_7_82
Type: CAZyme
Location: 109991 - 112327 (+)
Type: CAZyme
Location: 109991 - 112327 (+)
Gene ID: HRGMv2_3897_7_83
Type:
Location: 112366 - 114774 (+)
Type:
Location: 112366 - 114774 (+)
Gene ID: HRGMv2_3897_7_84
Type: CAZyme
Location: 114827 - 116713 (+)
Type: CAZyme
Location: 114827 - 116713 (+)
Gene ID: HRGMv2_3897_7_85
Type: pfam
Location: 116901 - 117824 (+)
Type: pfam
Location: 116901 - 117824 (+)
Gene ID: HRGMv2_3897_7_86
Type: CAZyme
Location: 117893 - 119344 (+)
Type: CAZyme
Location: 117893 - 119344 (+)
Gene ID: HRGMv2_3897_7_87
Type: CAZyme
Location: 119385 - 122123 (+)
Type: CAZyme
Location: 119385 - 122123 (+)
Gene ID: HRGMv2_3897_7_88
Type: CAZyme
Location: 122152 - 123210 (+)
Type: CAZyme
Location: 122152 - 123210 (+)
Gene ID: HRGMv2_3897_7_89
Type: CAZyme
Location: 123227 - 125503 (+)
Type: CAZyme
Location: 123227 - 125503 (+)
Gene ID: HRGMv2_3897_7_90
Type: TC
Location: 125766 - 127337 (+)
Type: TC
Location: 125766 - 127337 (+)
Gene ID: HRGMv2_3897_7_91
Type: STP
Location: 127393 - 128061 (+)
Type: STP
Location: 127393 - 128061 (+)
Gene ID: HRGMv2_3897_7_92
Type: pfam
Location: 128094 - 129092 (+)
Type: pfam
Location: 128094 - 129092 (+)
Gene ID: HRGMv2_3897_7_93
Type: CAZyme
Location: 129105 - 130172 (+)
Type: CAZyme
Location: 129105 - 130172 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.