Cluster: HRGMv2_3897_CGC19
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_3897
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_144 | 173213 | 175453 | - | GH92 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_145 | 175513 | 177594 | - | GH20 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_146 | 177729 | 180062 | - | GH20 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_147 | 180183 | 182756 | - | GH2 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_148 | 183036 | 185669 | + | Transglut_core | Big_1 |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_149 | 185653 | 186402 | - | 9.B.158.1.1 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_150 | 186443 | 187096 | - | TPK_catalytic | Thi_PPkinase_C |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_151 | 187089 | 187661 | - | 4.B.1.1.4 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_152 | 188293 | 189558 | - | GH154 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_153 | 189587 | 191902 | - | GH3 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_154 | 191948 | 193213 | - | GH88 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_155 | 193619 | 196474 | - | CBM32 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_156 | 196546 | 198387 | - | PL35 |
| sulfatase | HRGMv2_3897_5 | HRGMv2_3897_5_157 | 198421 | 200337 | - | S1_8 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_158 | 200435 | 202339 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_159 | 202348 | 205533 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_160 | 205724 | 207865 | - | GH141 |
Gene ID: HRGMv2_3897_5_144
Type: CAZyme
Location: 173213 - 175453 (-)
Type: CAZyme
Location: 173213 - 175453 (-)
Gene ID: HRGMv2_3897_5_145
Type: CAZyme
Location: 175513 - 177594 (-)
Type: CAZyme
Location: 175513 - 177594 (-)
Gene ID: HRGMv2_3897_5_146
Type: CAZyme
Location: 177729 - 180062 (-)
Type: CAZyme
Location: 177729 - 180062 (-)
Gene ID: HRGMv2_3897_5_147
Type: CAZyme
Location: 180183 - 182756 (-)
Type: CAZyme
Location: 180183 - 182756 (-)
Gene ID: HRGMv2_3897_5_148
Type: pfam
Location: 183036 - 185669 (+)
Type: pfam
Location: 183036 - 185669 (+)
Gene ID: HRGMv2_3897_5_149
Type: TC
Location: 185653 - 186402 (-)
Type: TC
Location: 185653 - 186402 (-)
Gene ID: HRGMv2_3897_5_150
Type: pfam
Location: 186443 - 187096 (-)
Type: pfam
Location: 186443 - 187096 (-)
Gene ID: HRGMv2_3897_5_151
Type: TC
Location: 187089 - 187661 (-)
Type: TC
Location: 187089 - 187661 (-)
Gene ID: HRGMv2_3897_5_152
Type: CAZyme
Location: 188293 - 189558 (-)
Type: CAZyme
Location: 188293 - 189558 (-)
Gene ID: HRGMv2_3897_5_153
Type: CAZyme
Location: 189587 - 191902 (-)
Type: CAZyme
Location: 189587 - 191902 (-)
Gene ID: HRGMv2_3897_5_154
Type: CAZyme
Location: 191948 - 193213 (-)
Type: CAZyme
Location: 191948 - 193213 (-)
Gene ID: HRGMv2_3897_5_155
Type: CAZyme
Location: 193619 - 196474 (-)
Type: CAZyme
Location: 193619 - 196474 (-)
Gene ID: HRGMv2_3897_5_156
Type: CAZyme
Location: 196546 - 198387 (-)
Type: CAZyme
Location: 196546 - 198387 (-)
Gene ID: HRGMv2_3897_5_157
Type: sulfatase
Location: 198421 - 200337 (-)
Type: sulfatase
Location: 198421 - 200337 (-)
Gene ID: HRGMv2_3897_5_158
Type: pfam
Location: 200435 - 202339 (-)
Type: pfam
Location: 200435 - 202339 (-)
Gene ID: HRGMv2_3897_5_159
Type: TC
Location: 202348 - 205533 (-)
Type: TC
Location: 202348 - 205533 (-)
Gene ID: HRGMv2_3897_5_160
Type: CAZyme
Location: 205724 - 207865 (-)
Type: CAZyme
Location: 205724 - 207865 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.