Cluster: HRGMv2_3897_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3897
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_2 | 899 | 1849 | + | GT2 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_3 | 1877 | 2422 | + | DUF6452 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_4 | 2373 | 3107 | + | DUF6048 |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_5 | 3116 | 3682 | + | 2.A.107.1.2 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_6 | 3700 | 4719 | + | ApbE |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_7 | 4896 | 5801 | - | 2.A.7.3.57 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_8 | 5855 | 6607 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_9 | 6679 | 7347 | - | DUF5715 |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_10 | 7659 | 8735 | + | 2.A.98.1.3 |
| CAZyme | HRGMv2_3897_5 | HRGMv2_3897_5_11 | 8973 | 11582 | - | CBM32 |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_12 | 11686 | 13056 | - | F5_F8_type_C | BT_3987-like_N | BT_3987-like_N |
| pfam | HRGMv2_3897_5 | HRGMv2_3897_5_13 | 13085 | 15031 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3897_5 | HRGMv2_3897_5_14 | 15043 | 18198 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3897_5_2
Type: CAZyme
Location: 899 - 1849 (+)
Type: CAZyme
Location: 899 - 1849 (+)
Gene ID: HRGMv2_3897_5_3
Type: pfam
Location: 1877 - 2422 (+)
Type: pfam
Location: 1877 - 2422 (+)
Gene ID: HRGMv2_3897_5_4
Type: pfam
Location: 2373 - 3107 (+)
Type: pfam
Location: 2373 - 3107 (+)
Gene ID: HRGMv2_3897_5_5
Type: TC
Location: 3116 - 3682 (+)
Type: TC
Location: 3116 - 3682 (+)
Gene ID: HRGMv2_3897_5_6
Type: pfam
Location: 3700 - 4719 (+)
Type: pfam
Location: 3700 - 4719 (+)
Gene ID: HRGMv2_3897_5_7
Type: TC
Location: 4896 - 5801 (-)
Type: TC
Location: 4896 - 5801 (-)
Gene ID: HRGMv2_3897_5_8
Type: pfam
Location: 5855 - 6607 (-)
Type: pfam
Location: 5855 - 6607 (-)
Gene ID: HRGMv2_3897_5_9
Type: pfam
Location: 6679 - 7347 (-)
Type: pfam
Location: 6679 - 7347 (-)
Gene ID: HRGMv2_3897_5_10
Type: TC
Location: 7659 - 8735 (+)
Type: TC
Location: 7659 - 8735 (+)
Gene ID: HRGMv2_3897_5_11
Type: CAZyme
Location: 8973 - 11582 (-)
Type: CAZyme
Location: 8973 - 11582 (-)
Gene ID: HRGMv2_3897_5_12
Type: pfam
Location: 11686 - 13056 (-)
Type: pfam
Location: 11686 - 13056 (-)
Gene ID: HRGMv2_3897_5_13
Type: pfam
Location: 13085 - 15031 (-)
Type: pfam
Location: 13085 - 15031 (-)
Gene ID: HRGMv2_3897_5_14
Type: TC
Location: 15043 - 18198 (-)
Type: TC
Location: 15043 - 18198 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.