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Cluster: HRGMv2_3897_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_53 71072 73279 - PL8_3
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_54 73316 75520 - PL8_3
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_55 75748 77187 - GH29
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_56 77422 78531 + GH105
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_57 78573 80678 + GH2
TF HRGMv2_3897_4 HRGMv2_3897_4_58 80641 81186 + KilA-N
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_59 81878 83119 - GH154
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_60 83153 84373 - GH88
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_61 84513 86468 - PL33_1
TC HRGMv2_3897_4 HRGMv2_3897_4_62 86756 90091 + 1.B.14.6.1
pfam HRGMv2_3897_4 HRGMv2_3897_4_63 90104 91876 + SusD_RagB | SusD-like_3
pfam HRGMv2_3897_4 HRGMv2_3897_4_64 92063 93052 + Metallophos
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_65 93067 94614 + GH5_22 | GH5_28
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_66 94619 96901 + GH95
CAZyme HRGMv2_3897_4 HRGMv2_3897_4_67 96964 99231 + GH89
TC HRGMv2_3897_4 HRGMv2_3897_4_68 99332 100702 - 2.A.6.2.23
TC HRGMv2_3897_4 HRGMv2_3897_4_69 100699 103839 - 2.A.6.2.22
TC HRGMv2_3897_4 HRGMv2_3897_4_70 103842 104933 - 2.A.6.2.4
TF HRGMv2_3897_4 HRGMv2_3897_4_71 105189 109229 - HTH_AraC | HTH_AraC
TC HRGMv2_3897_4 HRGMv2_3897_4_72 110113 113295 + 1.B.14.6.1
pfam HRGMv2_3897_4 HRGMv2_3897_4_73 113308 115350 + SusD_RagB | SusD-like_3
TC HRGMv2_3897_4 HRGMv2_3897_4_74 115506 116471 - 2.A.19.5.2
pfam HRGMv2_3897_4 HRGMv2_3897_4_75 116746 117831 - DUF3810
TC HRGMv2_3897_4 HRGMv2_3897_4_76 118030 119262 + 9.B.156.3.1
pfam HRGMv2_3897_4 HRGMv2_3897_4_77 119354 119770 + YbeY
TC HRGMv2_3897_4 HRGMv2_3897_4_78 119805 121676 + 1.C.39.4.5
Gene ID: HRGMv2_3897_4_53
Type: CAZyme
Location: 71072 - 73279 (-)
Gene ID: HRGMv2_3897_4_54
Type: CAZyme
Location: 73316 - 75520 (-)
Gene ID: HRGMv2_3897_4_55
Type: CAZyme
Location: 75748 - 77187 (-)
Gene ID: HRGMv2_3897_4_56
Type: CAZyme
Location: 77422 - 78531 (+)
Gene ID: HRGMv2_3897_4_57
Type: CAZyme
Location: 78573 - 80678 (+)
Gene ID: HRGMv2_3897_4_58
Type: TF
Location: 80641 - 81186 (+)
Gene ID: HRGMv2_3897_4_59
Type: CAZyme
Location: 81878 - 83119 (-)
Gene ID: HRGMv2_3897_4_60
Type: CAZyme
Location: 83153 - 84373 (-)
Gene ID: HRGMv2_3897_4_61
Type: CAZyme
Location: 84513 - 86468 (-)
Gene ID: HRGMv2_3897_4_62
Type: TC
Location: 86756 - 90091 (+)
Gene ID: HRGMv2_3897_4_63
Type: pfam
Location: 90104 - 91876 (+)
Gene ID: HRGMv2_3897_4_64
Type: pfam
Location: 92063 - 93052 (+)
Gene ID: HRGMv2_3897_4_65
Type: CAZyme
Location: 93067 - 94614 (+)
Gene ID: HRGMv2_3897_4_66
Type: CAZyme
Location: 94619 - 96901 (+)
Gene ID: HRGMv2_3897_4_67
Type: CAZyme
Location: 96964 - 99231 (+)
Gene ID: HRGMv2_3897_4_68
Type: TC
Location: 99332 - 100702 (-)
Gene ID: HRGMv2_3897_4_69
Type: TC
Location: 100699 - 103839 (-)
Gene ID: HRGMv2_3897_4_70
Type: TC
Location: 103842 - 104933 (-)
Gene ID: HRGMv2_3897_4_71
Type: TF
Location: 105189 - 109229 (-)
Gene ID: HRGMv2_3897_4_72
Type: TC
Location: 110113 - 113295 (+)
Gene ID: HRGMv2_3897_4_73
Type: pfam
Location: 113308 - 115350 (+)
Gene ID: HRGMv2_3897_4_74
Type: TC
Location: 115506 - 116471 (-)
Gene ID: HRGMv2_3897_4_75
Type: pfam
Location: 116746 - 117831 (-)
Gene ID: HRGMv2_3897_4_76
Type: TC
Location: 118030 - 119262 (+)
Gene ID: HRGMv2_3897_4_77
Type: pfam
Location: 119354 - 119770 (+)
Gene ID: HRGMv2_3897_4_78
Type: TC
Location: 119805 - 121676 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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