Cluster: HRGMv2_3897_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3897
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3897_3 | HRGMv2_3897_3_137 | 159349 | 162444 | - | 2.A.6.2.37 |
| TC | HRGMv2_3897_3 | HRGMv2_3897_3_138 | 162548 | 163624 | - | 2.A.6.2.39 |
| TF | HRGMv2_3897_3 | HRGMv2_3897_3_139 | 163992 | 164873 | + | HTH_AraC |
| CAZyme | HRGMv2_3897_3 | HRGMv2_3897_3_140 | 165004 | 167382 | + | GT2 |
| pfam | HRGMv2_3897_3 | HRGMv2_3897_3_141 | 167394 | 168704 | + | SpoIID |
| TC | HRGMv2_3897_3 | HRGMv2_3897_3_142 | 168807 | 170093 | + | 2.A.1.25.5 |
| TC | HRGMv2_3897_3 | HRGMv2_3897_3_143 | 170191 | 171876 | - | 2.A.81.1.2 |
Gene ID: HRGMv2_3897_3_137
Type: TC
Location: 159349 - 162444 (-)
Type: TC
Location: 159349 - 162444 (-)
Gene ID: HRGMv2_3897_3_138
Type: TC
Location: 162548 - 163624 (-)
Type: TC
Location: 162548 - 163624 (-)
Gene ID: HRGMv2_3897_3_139
Type: TF
Location: 163992 - 164873 (+)
Type: TF
Location: 163992 - 164873 (+)
Gene ID: HRGMv2_3897_3_140
Type: CAZyme
Location: 165004 - 167382 (+)
Type: CAZyme
Location: 165004 - 167382 (+)
Gene ID: HRGMv2_3897_3_141
Type: pfam
Location: 167394 - 168704 (+)
Type: pfam
Location: 167394 - 168704 (+)
Gene ID: HRGMv2_3897_3_142
Type: TC
Location: 168807 - 170093 (+)
Type: TC
Location: 168807 - 170093 (+)
Gene ID: HRGMv2_3897_3_143
Type: TC
Location: 170191 - 171876 (-)
Type: TC
Location: 170191 - 171876 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.