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Cluster: HRGMv2_3897_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3897_3 HRGMv2_3897_3_100 116436 117701 - GT4
pfam HRGMv2_3897_3 HRGMv2_3897_3_101 118082 119245 - Cyt_bd_oxida_II
TC HRGMv2_3897_3 HRGMv2_3897_3_102 119350 120846 - 3.D.4.3.2
pfam HRGMv2_3897_3 HRGMv2_3897_3_103 121151 121360 - DUF4492
TC HRGMv2_3897_3 HRGMv2_3897_3_104 121517 122860 + 3.A.1.109.5
TC HRGMv2_3897_3 HRGMv2_3897_3_105 122879 124093 + 8.A.1.2.2
TC HRGMv2_3897_3 HRGMv2_3897_3_106 124237 124983 + 3.A.1.122.2
TC HRGMv2_3897_3 HRGMv2_3897_3_107 125041 126261 + 3.A.1.122.1
Gene ID: HRGMv2_3897_3_100
Type: CAZyme
Location: 116436 - 117701 (-)
Gene ID: HRGMv2_3897_3_101
Type: pfam
Location: 118082 - 119245 (-)
Gene ID: HRGMv2_3897_3_102
Type: TC
Location: 119350 - 120846 (-)
Gene ID: HRGMv2_3897_3_103
Type: pfam
Location: 121151 - 121360 (-)
Gene ID: HRGMv2_3897_3_104
Type: TC
Location: 121517 - 122860 (+)
Gene ID: HRGMv2_3897_3_105
Type: TC
Location: 122879 - 124093 (+)
Gene ID: HRGMv2_3897_3_106
Type: TC
Location: 124237 - 124983 (+)
Gene ID: HRGMv2_3897_3_107
Type: TC
Location: 125041 - 126261 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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