Cluster: HRGMv2_3896_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3896
- CGC Family ID: CGCFAM_00118
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3896_4 | HRGMv2_3896_4_88 | 93474 | 96476 | + | 1.B.14.6.1 |
| TC | HRGMv2_3896_4 | HRGMv2_3896_4_89 | 96536 | 98242 | + | 8.A.46.1.1 |
| pfam | HRGMv2_3896_4 | HRGMv2_3896_4_90 | 98270 | 99127 | + | SusF_SusE | SusF_SusE |
| CAZyme | HRGMv2_3896_4 | HRGMv2_3896_4_91 | 99142 | 100602 | + | GH27 |
| CAZyme | HRGMv2_3896_4 | HRGMv2_3896_4_92 | 100644 | 102749 | + | GH97 |
Gene ID: HRGMv2_3896_4_88
Type: TC
Location: 93474 - 96476 (+)
Type: TC
Location: 93474 - 96476 (+)
Gene ID: HRGMv2_3896_4_89
Type: TC
Location: 96536 - 98242 (+)
Type: TC
Location: 96536 - 98242 (+)
Gene ID: HRGMv2_3896_4_90
Type: pfam
Location: 98270 - 99127 (+)
Type: pfam
Location: 98270 - 99127 (+)
Gene ID: HRGMv2_3896_4_91
Type: CAZyme
Location: 99142 - 100602 (+)
Type: CAZyme
Location: 99142 - 100602 (+)
Gene ID: HRGMv2_3896_4_92
Type: CAZyme
Location: 100644 - 102749 (+)
Type: CAZyme
Location: 100644 - 102749 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.